Gene omics information

Query gene ID PtpAffx.209537.1.S1_at
Gene name hypothetical protein
Organism Populus trichocarpa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.9199.2PtpAffx.209537.1.S1_atpmrna18896hypothetical protein-1e+0At3g59250F-box family proteinS.X.H.G.
0.9199.2PtpAffx.162331.1.S1_atCA821362--1e+0At4g11640ATSR (ARABIDOPSIS THALIANA SERINE RACEMASE)S.X.H.G.
0.8096.0PtpAffx.200185.1.S1_atpmrna342hypothetical protein-8e-4At2g44450BGLU15 (BETA GLUCOSIDASE 15)S.X.H.G.
0.7393.6PtpAffx.21178.1.S1_atBU887045hypothetical protein-1e+0At5g61210SNAP33 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 33)S.X.H.G.
0.7393.6PtpAffx.127059.1.A1_atCV258719hypothetical protein-1e-4At1g66270BGLU21S.X.H.G.
0.4067.0PtpAffx.212416.1.S1_atpmrna24321hypothetical protein-5e-1At2g43350ATGPX3 (GLUTATHIONE PEROXIDASE 3)S.X.H.G.
Click here to hide the above table.


Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
86.3100.0GSM327409Populus balsamifera_1006_root_midday_3GSE13990Populus balsamifera developmental tissue series
6.297.6GSM327408Populus balsamifera_1006_root_midday_2GSE13990Populus balsamifera developmental tissue series
2.088.0GSM327407Populus balsamifera_1006_root_midday_1GSE13990Populus balsamifera developmental tissue series
0.142.9GSM327358Populus balsamifera_20071015_Seedling_continuous_light_6d_2GSE13990Populus balsamifera developmental tissue series
0.142.9GSM327359Populus balsamifera_20071015_Seedling_continuous_light_6d_3GSE13990Populus balsamifera developmental tissue series
0.142.9GSM327281Populus balsamifera_20071015_Seedling_continuous_light_6d_1GSE13990Populus balsamifera developmental tissue series
0.033.6GSM328284Populus x canescens root control_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplar
0.033.6GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue series
0.033.6GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
0.033.6GSM328558Populus x canescens root control_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplar
Click here to hide the above table.


Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
1.0001457PtpAffx.209537.1.S1_s_atpmrna18896hypothetical protein-1e+0At3g59250F-box family proteinC.G.S.X.
0.286e-22105PtpAffx.22588.1.S1_atCV230063hypothetical protein-2e+0At2g32720CB5-B (CYTOCHROME B5 ISOFORM B)C.G.S.X.
0.022e+034PtpAffx.9325.1.A1_atCV268992hypothetical protein-3e-14At1g54210ATG12A (AUTOPHAGY 12 A)C.G.S.X.
0.022e+034PtpAffx.9325.3.A1_a_atCV261752hypothetical protein-1e-1At1g76300SmD3 (snRNP core protein SmD3)C.G.S.X.
0.022e+034PtpAffx.5498.1.A1_atCV234927--3e-18At2g47580U1A (SPLICEOSOMAL PROTEIN U1A)C.G.S.X.
0.022e+034PtpAffx.22222.2.A1_atCK091715--9e-8At5g09970CYP78A7C.G.S.X.
0.032e+034PtpAffx.216619.1.S1_atpmrna31522hypothetical protein-1e+0At3g02920replication protein-relatedC.G.S.X.
0.022e+034PtpAffx.211411.1.S1_atpmrna22362hypothetical protein-2e-1At4g09649unknown proteinC.G.S.X.
0.022e+034PtpAffx.206518.1.S1_atpmrna12923--6e-7At3g32400formin homology 2 domain-containing protein / FH2 domain-containing proteinC.G.S.X.
Click here to hide the above table.



Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.021e+034Arabidopsis thalianaAt3g59250825094F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P---C.G.S.X.
0.031e-138Glycine maxGmaAffx.93506.1.S1_atCF809231--1e+0Atmg00160-C.G.S.X.
0.033e+032Hordeum vulgareContig18037_atContig18037--1e+0At3g27770unknown proteinC.G.S.X.
0.033e+034Oryza sativaOs12g02644009640.m01595--3e+0At5g18320armadillo/beta-catenin repeat family protein / U-box domain-containing proteinC.G.S.X.
0.042e+034Triticum aestivumTaAffx.51842.1.S1_x_atCA718028--7e+0At4g10150zinc finger (C3HC4-type RING finger) family proteinC.G.S.X.
0.034e-134Vitis vinifera1614336_atCF211652hypothetical protein LOC100242597-4e-1At4g27657unknown proteinC.G.S.X.
0.031e+130Zea maysZmAffx.421.1.A1_atAI676853--3e+0At3g28950avirulence-responsive protein-related / avirulence induced gene (AIG) protein-relatedC.G.S.X.
Click here to hide the above table.


Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
Click here to hide the above table.


Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
Click here to hide the above table.



Back to the CoP portal site

Back to the KAGIANA project homepage