CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.209527.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.44 71.9 PtpAffx.209527.1.S1_at pmrna18875 hypothetical protein - 3e-1 At4g38870 F-box family protein S.X. H.G.
0.36 61.6 Ptp.3194.1.A1_at DN485939 - - 1e+0 At1g29195 unknown protein S.X. H.G.
0.21 36.5 PtpAffx.216771.1.S1_at pmrna31758 hypothetical protein - 7e+0 At3g52941 unknown protein S.X. H.G.
0.20 34.6 PtpAffx.208416.1.S1_at pmrna16726 hypothetical protein - 3e+0 At4g00234 - S.X. H.G.
0.14 23.5 PtpAffx.1092.2.A1_at CV248692 - - 3e-1 At2g33810 SPL3 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 3) S.X. H.G.
0.10 16.3 PtpAffx.35277.1.S1_at BU874449 - - 3e+0 At3g04280 ARR22 (ARABIDOPSIS RESPONSE REGULATOR 22) S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
18.1 99.7 GSM362888 Clone1979_LPI5_N+_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
12.8 99.3 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
5.7 97.3 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
5.0 96.6 GSM327659 Populus balsamifera_Male_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
5.0 96.6 GSM372094 Clone3200_LPI5_N+_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.5 96.1 GSM327412 Populus balsamifera_1006_differentiating_xylem_midday_2 GSE13990 Populus balsamifera developmental tissue series
4.1 95.5 GSM372093 Clone3200_LPI5_N+_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.0 95.3 GSM372091 Clone3200_LPI2_N-_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.0 92.9 GSM327281 Populus balsamifera_20071015_Seedling_continuous_light_6d_1 GSE13990 Populus balsamifera developmental tissue series
3.0 92.9 GSM334225 Populus balsamifera_1006_mature_leaf_midday_2 GSE13990 Populus balsamifera developmental tissue series
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.79 0 636 PtpAffx.207535.1.S1_at pmrna14952 hypothetical protein - 1e-3 At4g14630 GLP9 (GERMIN-LIKE PROTEIN 9) C.G. S.X.
0.17 7e-3 42 PtpAffx.222046.1.S1_s_at pmrna39248 hypothetical protein - 1e-2 At5g38940 manganese ion binding / nutrient reservoir C.G. S.X.
0.17 7e-3 42 PtpAffx.209525.1.S1_at pmrna18873 hypothetical protein - 3e-1 At5g39110 germin-like protein, putative C.G. S.X.
0.14 7e-3 42 PtpAffx.207842.1.S1_at pmrna15575 - - 2e-2 At5g38940 manganese ion binding / nutrient reservoir C.G. S.X.
0.05 3e-2 40 PtpAffx.221280.1.S1_at pmrna38049 - - 5e+0 At5g17660 tRNA (guanine-N7-)-methyltransferase C.G. S.X.
0.04 1e-1 38 PtpAffx.209526.1.S1_at pmrna18874 hypothetical protein - 4e+0 At5g54010 glycosyltransferase family protein C.G. S.X.
0.03 2e+0 34 PtpAffx.66002.1.S1_at DN495996 inner membrane protein - 3e+0 At5g46795 MSP2 (microspore-specific promoter 2) C.G. S.X.
0.03 2e+0 34 PtpAffx.218271.1.S1_at pmrna33824 hypothetical protein - 1e+0 At3g12710 methyladenine glycosylase family protein C.G. S.X.
0.02 2e+0 34 PtpAffx.215005.1.S1_at pmrna28945 hypothetical protein - 8e+0 At5g67560 ATARLA1D (ADP-ribosylation factor-like A1D) C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 3e-1 36 Arabidopsis thaliana At4g38870 830042 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P - - - C.G. S.X.
0.13 2e-3 44 Glycine max Gma.12770.1.A1_at CD397137 - - 3e+0 At5g64816 unknown protein C.G. S.X.
0.03 2e+0 32 Hordeum vulgare Contig3157_at Contig3157 - - 1e-2 At5g38950 germin-like protein-related C.G. S.X.
0.04 9e+0 32 Oryza sativa OsAffx.8236.1.A1_x_at - - - 0 C.G. S.X.
0.03 1e+0 34 Triticum aestivum TaAffx.66865.1.S1_at CA707529 - - 4e-3 At2g43940 thiol methyltransferase, putative C.G. S.X.
0.04 4e-1 34 Vitis vinifera 1618402_at CF212929 - - 7e-1 At4g33230 pectinesterase family protein C.G. S.X.
0.03 5e-1 34 Zea mays Zm.34.2.A1_at AY103769.1 nuclear cap-binding protein subunit 2 - 1e-13 At5g44200 CBP20 (CAP-BINDING PROTEIN 20) C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage