Gene omics information

Query gene ID	PtpAffx.209432.1.S1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	91.1	PtpAffx.209432.1.S1_at	pmrna18676	hypothetical protein	-	3e-145	At3g10420	sporulation protein-related	S.X.	H.G.	Please selecteFP Browser (expression)
0.44	71.9	PtpAffx.160733.1.S1_s_at	AJ780703	hypothetical protein	-	6e-25	At3g07700	ABC1 family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.44	71.9	Ptp.6110.1.S1_at	CV266769	hypothetical protein	-	3e-14	At3g10420	sporulation protein-related	S.X.	H.G.	Please selecteFP Browser (expression)
0.38	63.7	Ptp.5123.1.S1_s_at	BI123501	hypothetical protein	-	2e-71	At3g07700	ABC1 family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.29	50.5	PtpAffx.13485.1.A1_at	CV255649	hypothetical protein	-	4e-11	At5g54390	AHL (ARABIDOPSIS HAL2-LIKE)	S.X.	H.G.	Please selecteFP Browser (expression)
0.27	47.1	PtpAffx.221479.1.S1_s_at	pmrna38382	hypothetical protein	-	2e-6	At1g15760	-	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
10.8	99.1	GSM244430	non infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
7.2	98.1	GSM244435	Mlp infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
6.6	97.9	GSM244431	non infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
5.7	97.3	GSM372042	Clone1979_LPI5_N-_8w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
5.2	96.8	GSM327397	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_2	GSE13990	Populus balsamifera developmental tissue series
5.0	96.6	GSM372097	Clone3200_LPI5_N-_8w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.4	95.9	GSM244433	Mlp infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
4.3	95.8	GSM244440	Mixed infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
4.0	95.3	GSM372098	Clone3200_LPI5_N-_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.8	92.1	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.17	3e-109	397	Ptp.6110.1.S1_at	CV266769	hypothetical protein	-	3e-14	At3g10420	sporulation protein-related	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	7e-2	40	PtpAffx.203075.1.S1_at	pmrna6086	-	-	3e-1	At3g02980	GCN5-related N-acetyltransferase (GNAT) family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	3e-1	38	PtpAffx.71326.1.S1_at	CK090739	-	-	5e+0	Atmg00650	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	3e-1	38	PtpAffx.40802.2.S1_at	BU867655	-	-	8e+0	At5g57720	transcriptional factor B3 family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	3e-1	38	PtpAffx.225405.1.S1_at	pmrna44730	hypothetical protein	-	1e-49	At1g19780	ATCNGC8 (CYCLIC NUCLEOTIDE GATED CHANNEL 8)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	3e-1	38	PtpAffx.210578.1.S1_at	pmrna20747	hypothetical protein	-	1e-27	At5g66540	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	3e-1	38	PtpAffx.209859.1.S1_at	pmrna19433	hypothetical protein	-	2e-2	At5g23480	DNA binding	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	3e-1	38	PtpAffx.202267.1.S1_at	pmrna4539	hypothetical protein	-	1e-6	At3g61800	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	1e+0	36	PtpAffx.224569.1.S1_at	pmrna43220	hypothetical protein	-	6e-20	At1g50310	STP9 (SUGAR TRANSPORTER 9)	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.39	3e-145	515	Arabidopsis thaliana	At3g10420	820206	sporulation protein-related	F:nucleoside-triphosphatase activity, nucleotide binding;P:unknown;C:chloroplast;BOPAMF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.11	1e-22	109	Glycine max	Gma.17408.1.S1_at	BE057084	-	-	8e-3	At3g10420	sporulation protein-related	C.G.	S.X.	Please select
0.19	1e-44	180	Hordeum vulgare	Contig8666_at	Contig8666	-	-	1e-30	At3g10420	sporulation protein-related	C.G.	S.X.	Please select
0.20	2e-43	178	Oryza sativa	Os07g0187400	9635.m00855	-	AAA ATPase domain containing protein	4e-34	At3g10420	sporulation protein-related	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	2e-1	38	Triticum aestivum	Ta.30724.1.S1_at	CD881699	-	-	2e+0	At1g33290	sporulation protein-related	C.G.	S.X.	Please select
0.02	2e-1	36	Vitis vinifera	1615736_at	CD711591	-	-	7e+0	At5g40570	surfeit locus protein 2 family protein / SURF2 family protein	C.G.	S.X.	Please select
0.01	3e-1	36	Zea mays	Zm.1515.1.A1_at	BM380375	P-protein	-	5e-4	At3g07630	ADT2 (arogenate dehydratase 2)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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