CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.209407.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 91.1 PtpAffx.209407.1.S1_at pmrna18634 hypothetical protein - 2e-39 At2g38970 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
0.60 86.0 PtpAffx.206196.1.S1_at pmrna12304 hypothetical protein - 4e-19 At2g19090 unknown protein S.X. H.G.
0.50 78.6 PtpAffx.204628.1.S1_s_at pmrna9099 hypothetical protein - 3e+0 At4g00232 unknown protein S.X. H.G.
0.50 78.6 PtpAffx.55272.1.S1_at BP927962 - - 5e-9 At3g58050 unknown protein S.X. H.G.
0.43 69.7 PtpAffx.8434.1.A1_at CV268037 hypothetical protein - 4e-20 At3g21600 senescence/dehydration-associated protein-related S.X. H.G.
0.40 67.0 PtpAffx.56940.1.A1_at CV243741 hypothetical protein - 1e-2 At5g62900 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
17.6 99.7 GSM327409 Populus balsamifera_1006_root_midday_3 GSE13990 Populus balsamifera developmental tissue series
11.9 99.2 GSM327408 Populus balsamifera_1006_root_midday_2 GSE13990 Populus balsamifera developmental tissue series
8.3 98.5 GSM327407 Populus balsamifera_1006_root_midday_1 GSE13990 Populus balsamifera developmental tissue series
3.1 93.2 GSM328285 Populus x canescens root control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.1 93.2 GSM328567 Populus x canescens root hypoxia_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.0 92.9 GSM328560 Populus x canescens root control_rep_11 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.7 91.8 GSM328564 Populus x canescens root hypoxia_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.3 89.8 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.3 89.8 GSM328558 Populus x canescens root control_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.2 89.3 GSM328565 Populus x canescens root hypoxia_rep_07 GSE13109 Effect of hypoxia on gene expression in Grey poplar
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.93 0 3059 PtpAffx.207636.1.S1_at pmrna15137 hypothetical protein - 1e-40 At2g38970 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.07 7e-15 83 PtpAffx.90642.2.A1_a_at CK091213 hypothetical protein - 1e-1 At5g60710 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.08 3e-14 81 PtpAffx.4447.1.S1_at CX175257 hypothetical protein - 4e-4 At2g38970 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.08 3e-14 81 PtpAffx.129161.1.S1_at CK107723 hypothetical protein - 4e-4 At3g54780 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.02 1e-1 40 PtpAffx.73873.1.S1_at DN503258 - - 6e-2 At2g29320 tropinone reductase, putative / tropine dehydrogenase, putative C.G. S.X.
0.01 1e-1 40 PtpAffx.219684.1.S1_at pmrna35655 hypothetical protein - 3e-4 At5g19520 MSL9 (MECHANOSENSITIVE CHANNEL OF SMALL CONDUCTANCE-LIKE 9) C.G. S.X.
0.01 1e-1 40 Ptp.7337.1.S1_at DN493226 hypothetical protein - 7e-1 At2g30260 U2B'' (U2 small nuclear ribonucleoprotein B) C.G. S.X.
0.01 2e+0 36 PtpAffx.204903.1.S1_at pmrna9688 hypothetical protein - 2e-18 At4g09640 - C.G. S.X.
0.01 2e+0 36 PtpAffx.18333.1.A1_at CV252615 hypothetical protein - 3e-1 At5g61470 zinc finger (C2H2 type) family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.28 2e-39 165 Arabidopsis thaliana At2g38970 818482 zinc finger (C3HC4-type RING finger) family protein F:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:unknown;C:unknown;MBOPFAV - - - C.G. S.X.
0.14 6e-37 157 Glycine max GmaAffx.59042.1.S1_at BG352440 - - 1e-12 At3g54780 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.09 3e-2 40 Hordeum vulgare Contig10402_at Contig10402 - - 2e-1 At3g54780 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.11 2e-13 79 Oryza sativa Os02g0806700 AK072167.1 - Retroelement pol polyprotein-like 7e-12 At2g38970 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.04 2e-2 42 Triticum aestivum Ta.15389.1.S1_at CD935142 - - 1e+0 At5g60710 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.14 2e-8 59 Vitis vinifera 1617272_at CF518232 zinc finger RING-type protein-like - 1e-3 At3g54780 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.01 7e+0 32 Zea mays ZmAffx.1360.1.S1_at 40794996-48 - - 1e+0 At5g44650 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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