Gene omics information

Query gene ID PtpAffx.209407.1.S1_at
Gene name hypothetical protein
Organism Populus trichocarpa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.6791.1PtpAffx.209407.1.S1_atpmrna18634hypothetical protein-2e-39At2g38970zinc finger (C3HC4-type RING finger) family proteinS.X.H.G.
0.6086.0PtpAffx.206196.1.S1_atpmrna12304hypothetical protein-4e-19At2g19090unknown proteinS.X.H.G.
0.5078.6PtpAffx.204628.1.S1_s_atpmrna9099hypothetical protein-3e+0At4g00232unknown proteinS.X.H.G.
0.5078.6PtpAffx.55272.1.S1_atBP927962--5e-9At3g58050unknown proteinS.X.H.G.
0.4369.7PtpAffx.8434.1.A1_atCV268037hypothetical protein-4e-20At3g21600senescence/dehydration-associated protein-relatedS.X.H.G.
0.4067.0PtpAffx.56940.1.A1_atCV243741hypothetical protein-1e-2At5g62900unknown proteinS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
17.699.7GSM327409Populus balsamifera_1006_root_midday_3GSE13990Populus balsamifera developmental tissue series
11.999.2GSM327408Populus balsamifera_1006_root_midday_2GSE13990Populus balsamifera developmental tissue series
8.398.5GSM327407Populus balsamifera_1006_root_midday_1GSE13990Populus balsamifera developmental tissue series
3.193.2GSM328285Populus x canescens root control_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplar
3.193.2GSM328567Populus x canescens root hypoxia_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplar
3.092.9GSM328560Populus x canescens root control_rep_11GSE13109Effect of hypoxia on gene expression in Grey poplar
2.791.8GSM328564Populus x canescens root hypoxia_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplar
2.389.8GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.389.8GSM328558Populus x canescens root control_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplar
2.289.3GSM328565Populus x canescens root hypoxia_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplar
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.9303059PtpAffx.207636.1.S1_atpmrna15137hypothetical protein-1e-40At2g38970zinc finger (C3HC4-type RING finger) family proteinC.G.S.X.
0.077e-1583PtpAffx.90642.2.A1_a_atCK091213hypothetical protein-1e-1At5g60710zinc finger (C3HC4-type RING finger) family proteinC.G.S.X.
0.083e-1481PtpAffx.4447.1.S1_atCX175257hypothetical protein-4e-4At2g38970zinc finger (C3HC4-type RING finger) family proteinC.G.S.X.
0.083e-1481PtpAffx.129161.1.S1_atCK107723hypothetical protein-4e-4At3g54780zinc finger (C3HC4-type RING finger) family proteinC.G.S.X.
0.021e-140PtpAffx.73873.1.S1_atDN503258--6e-2At2g29320tropinone reductase, putative / tropine dehydrogenase, putativeC.G.S.X.
0.011e-140PtpAffx.219684.1.S1_atpmrna35655hypothetical protein-3e-4At5g19520MSL9 (MECHANOSENSITIVE CHANNEL OF SMALL CONDUCTANCE-LIKE 9)C.G.S.X.
0.011e-140Ptp.7337.1.S1_atDN493226hypothetical protein-7e-1At2g30260U2B'' (U2 small nuclear ribonucleoprotein B)C.G.S.X.
0.012e+036PtpAffx.204903.1.S1_atpmrna9688hypothetical protein-2e-18At4g09640-C.G.S.X.
0.012e+036PtpAffx.18333.1.A1_atCV252615hypothetical protein-3e-1At5g61470zinc finger (C2H2 type) family proteinC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.282e-39165Arabidopsis thalianaAt2g38970818482zinc finger (C3HC4-type RING finger) family proteinF:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:unknown;C:unknown;MBOPFAV---C.G.S.X.
0.146e-37157Glycine maxGmaAffx.59042.1.S1_atBG352440--1e-12At3g54780zinc finger (C3HC4-type RING finger) family proteinC.G.S.X.
0.093e-240Hordeum vulgareContig10402_atContig10402--2e-1At3g54780zinc finger (C3HC4-type RING finger) family proteinC.G.S.X.
0.112e-1379Oryza sativaOs02g0806700AK072167.1-Retroelement pol polyprotein-like7e-12At2g38970zinc finger (C3HC4-type RING finger) family proteinC.G.S.X.
0.042e-242Triticum aestivumTa.15389.1.S1_atCD935142--1e+0At5g60710zinc finger (C3HC4-type RING finger) family proteinC.G.S.X.
0.142e-859Vitis vinifera1617272_atCF518232zinc finger RING-type protein-like-1e-3At3g54780zinc finger (C3HC4-type RING finger) family proteinC.G.S.X.
0.017e+032Zea maysZmAffx.1360.1.S1_at40794996-48--1e+0At5g44650unknown proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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