CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.209317.1.S1_x_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.83 97.0 PtpAffx.209317.1.S1_x_at pmrna18410 hypothetical protein - 3e-14 At5g02030 RPL (REPLUMLESS) S.X. H.G.
0.46 73.7 PtpAffx.69108.1.S1_at AJ767594 - - 2e+1 At4g26810 SWIB complex BAF60b domain-containing protein S.X. H.G.
0.33 57.5 PtpAffx.216824.1.S1_s_at pmrna31860 hypothetical protein - 4e-1 At5g05113 unknown protein S.X. H.G.
0.33 57.5 Ptp.5459.1.S1_at CV257765 hypothetical protein - 6e-74 At1g55490 CPN60B (CHAPERONIN 60 BETA) S.X. H.G.
0.33 57.5 PtpAffx.49598.1.A1_s_at CV278478 - - 5e-3 At3g54210 ribosomal protein L17 family protein S.X. H.G.
0.27 47.1 PtpAffx.211673.1.S1_s_at pmrna22881 hypothetical protein - 1e-61 At4g01690 PPOX S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
10.5 99.0 GSM362883 Clone1979_LPI2_N+_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
9.5 98.8 GSM372091 Clone3200_LPI2_N-_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
7.8 98.4 GSM362890 Clone1979_LPI5_N-_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
6.2 97.6 GSM362887 Clone1979_LPI5_N+_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
5.9 97.4 GSM362884 Clone1979_LPI2_N+_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
5.2 96.8 GSM372089 Clone3200_LPI2_N+_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
5.0 96.6 GSM372092 Clone3200_LPI2_N-_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.1 95.5 GSM328275 Populus x canescens leaf hypoxia_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.3 93.7 GSM334225 Populus balsamifera_1006_mature_leaf_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.3 93.7 GSM372090 Clone3200_LPI2_N+_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
1.00 0 1719 PtpAffx.209317.1.S1_s_at pmrna18410 hypothetical protein - 3e-14 At5g02030 RPL (REPLUMLESS) C.G. S.X.
1.00 0 1719 PtpAffx.209317.1.S1_at pmrna18410 hypothetical protein - 3e-14 At5g02030 RPL (REPLUMLESS) C.G. S.X.
0.88 0 779 PtpAffx.207728.1.S1_at pmrna15361 hypothetical protein - 1e-16 At5g02030 RPL (REPLUMLESS) C.G. S.X.
0.04 6e-7 56 PtpAffx.19246.1.S1_at CV245825 hypothetical protein - 2e-32 At2g35940 BLH1 (BEL1-LIKE HOMEODOMAIN 1) C.G. S.X.
0.04 2e-6 54 PtpAffx.8016.1.S1_at CX182129 hypothetical protein - 3e-28 At5g41410 BEL1 (BELL 1) C.G. S.X.
0.02 6e-1 36 PtpAffx.205893.1.S1_at pmrna11681 - - 7e-7 At1g42560 MLO9 (MILDEW RESISTANCE LOCUS O 9) C.G. S.X.
0.01 6e-1 36 PtpAffx.202758.1.S1_at pmrna5502 hypothetical protein - 4e-21 At5g42950 GYF domain-containing protein C.G. S.X.
0.01 6e-1 36 PtpAffx.202758.1.S1_s_at pmrna5502 hypothetical protein - 4e-21 At5g42950 GYF domain-containing protein C.G. S.X.
0.02 6e-1 36 Ptp.3484.1.S1_at CV243694 hypothetical protein - 2e-1 At5g58350 WNK4 (WITH NO K (=LYSINE) 4) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 3e-14 79 Arabidopsis thaliana At5g02030 831745 RPL (REPLUMLESS) Mutant has additional lateral organs and phyllotaxy defect. Encodes a homeodomain transcription factor. Has sequence similarity to the Arabidopsis ovule development regulator Bell1. Binds directly to the AGAMOUS cis-regulatory element. Its localization to the nucleus is dependent on the coexpression of either STM or BP. - - - C.G. S.X.
0.08 4e-2 40 Glycine max GmaAffx.81750.2.S1_at BM568090 - - 4e-9 At1g19700 BEL10 (BEL1-LIKE HOMEODOMAIN 10) C.G. S.X.
0.03 1e-2 40 Hordeum vulgare Contig12274_at Contig12274 - - 3e-7 At5g02030 RPL (REPLUMLESS) C.G. S.X.
0.03 2e-4 48 Oryza sativa Os05g0455200 AK063788.1 - Homeodomain protein JUBEL2 8e-2 At2g35940 BLH1 (BEL1-LIKE HOMEODOMAIN 1) C.G. S.X.
0.08 1e-10 67 Triticum aestivum TaAffx.91832.1.S1_at BJ300850 - - 3e-7 At5g02030 RPL (REPLUMLESS) C.G. S.X.
0.17 3e-21 101 Vitis vinifera 1615068_at CF513427 hypothetical protein LOC100266680 - 3e-27 At5g02030 RPL (REPLUMLESS) C.G. S.X.
0.02 7e-1 34 Zea mays Zm.18003.1.A1_at BQ538144 - - 2e+0 At1g29140 pollen Ole e 1 allergen and extensin family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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