Gene omics information

Query gene ID	PtpAffx.209285.1.S1_at
Gene name	anthranilate synthase, alpha subunit 1
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.74	93.8	PtpAffx.209285.1.S1_at	pmrna18350	anthranilate synthase, alpha subunit 1	-	4e-21	At5g05730	ASA1 (ANTHRANILATE SYNTHASE ALPHA SUBUNIT 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.38	63.7	PtpAffx.5388.1.A1_at	CV239449	-	-	2e+0	At5g36659	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.35	59.7	PtpAffx.9269.1.S1_at	CK090642	hypothetical protein	-	4e-1	At3g62580	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.35	59.7	PtpAffx.24590.1.S1_at	CX169344	hypothetical protein	-	8e-2	At5g25570	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.28	50.5	PtpAffx.207033.1.S1_at	pmrna13939	hypothetical protein	-	4e-14	At3g18730	TSK (TONSOKU)	S.X.	H.G.	Please selecteFP Browser (expression)
0.23	40.5	PtpAffx.203737.1.S1_at	pmrna7385	hypothetical protein	-	4e-2	At4g27240	zinc finger (C2H2 type) family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.15	25.3	Ptp.8020.1.A1_at	CK090666	-	-	8e-45	At3g27360	histone H3	S.X.	H.G.	Please selecteFP Browser (expression)
0.14	23.5	PtpAffx.5253.1.A1_at	CV255813	-	-	2e+0	At4g32105	galactosyltransferase	S.X.	H.G.	Please selecteFP Browser (expression)
0.13	21.6	PtpAffx.108357.1.A1_at	CV243662	-	-	3e-5	At1g27360	squamosa promoter-binding protein-like 11 (SPL11)	S.X.	H.G.	Please selecteFP Browser (expression)
0.11	18.1	PtpAffx.94838.1.A1_at	CV269234	hypothetical protein	-	1e-3	At1g73620	thaumatin-like protein, putative / pathogenesis-related protein, putative	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
13.4	99.4	GSM327406	Populus balsamifera_1006_young_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
12.9	99.3	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
9.1	98.7	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
7.8	98.4	GSM362884	Clone1979_LPI2_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.6	96.2	GSM372089	Clone3200_LPI2_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.2	95.6	GSM372090	Clone3200_LPI2_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.8	94.9	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.5	94.3	GSM372091	Clone3200_LPI2_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.2	93.5	GSM362883	Clone1979_LPI2_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.2	93.5	GSM372092	Clone3200_LPI2_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.35	4e-108	393	PtpAffx.207746.1.S1_at	pmrna15407	anthranilate synthase, alpha subunit 1	-	1e-14	At5g05730	ASA1 (ANTHRANILATE SYNTHASE ALPHA SUBUNIT 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.47	5e-40	167	PtpAffx.149907.1.S1_at	DN486564	anthranilate synthase, alpha subunit 2	-	9e-25	At2g29690	ASA2 (ANTHRANILATE SYNTHASE 2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.07	2e-5	52	PtpAffx.200745.1.S1_at	pmrna1432	-	-	4e-1	At5g05730	ASA1 (ANTHRANILATE SYNTHASE ALPHA SUBUNIT 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	3e-1	38	PtpAffx.209023.1.S1_at	pmrna17873	hypothetical protein	-	3e-7	At1g69060	heat shock protein binding	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	3e-1	38	PtpAffx.209023.1.S1_s_at	pmrna17873	hypothetical protein	-	3e-7	At1g69060	heat shock protein binding	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	3e-1	38	PtpAffx.203339.1.S1_at	pmrna6644	hypothetical protein	-	4e-1	At5g44500	small nuclear ribonucleoprotein associated protein B, putative / snRNP-B, putative / Sm protein B, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	3e-1	38	PtpAffx.203338.1.S1_at	pmrna6643	hypothetical protein	-	3e-2	At3g47110	leucine-rich repeat transmembrane protein kinase, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	3e-1	38	PtpAffx.10771.4.S1_at	BU894833	hypothetical protein	-	2e-28	At1g75380	wound-responsive protein-related	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	3e-1	38	Ptp.3325.3.A1_at	CV282297	-	-	8e-12	At3g13540	ATMYB5 (MYB DOMAIN PROTEIN 5)	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.43	4e-21	103	Arabidopsis thaliana	At5g05730	830457	ASA1 (ANTHRANILATE SYNTHASE ALPHA SUBUNIT 1)	ASA1 encodes the alpha subunit of anthranilate synthase, which catalyzes the rate-limiting step of tryptophan synthesis. ASA1 is induced by ethylene, and forms a link between ethylene signalling and auxin synthesis in roots.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.29	6e-21	103	Glycine max	Gma.13056.1.S1_at	BG651726	-	-	2e-8	At2g29690	ASA2 (ANTHRANILATE SYNTHASE 2)	C.G.	S.X.	Please select
0.14	2e-18	93	Hordeum vulgare	Contig11179_at	Contig11179	-	-	5e-8	At5g05730	ASA1 (ANTHRANILATE SYNTHASE ALPHA SUBUNIT 1)	C.G.	S.X.	Please select
0.19	2e-33	145	Oryza sativa	Os03g0826500	AB022602.1	-	Anthranilate synthase alpha 1 subunit	5e-9	At5g05730	ASA1 (ANTHRANILATE SYNTHASE ALPHA SUBUNIT 1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.10	3e-19	97	Triticum aestivum	Ta.4287.1.S1_at	BQ161159	-	-	2e-8	At3g55870	anthranilate synthase, alpha subunit, putative	C.G.	S.X.	Please select
0.02	4e+0	32	Vitis vinifera	1622399_at	CF206628.1	similar to DNA-binding protein	-	2e-27	At4g31550	WRKY11	C.G.	S.X.	Please select
0.15	6e-15	81	Zea mays	Zm.17224.1.S1_s_at	BM500725	-	-	2e-11	At3g55870	anthranilate synthase, alpha subunit, putative	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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