Gene omics information

Query gene ID	PtpAffx.209236.1.S1_x_at
Gene name	AP2 domain-containing transcription factor
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.79	95.3	PtpAffx.209236.1.S1_x_at	pmrna18264	AP2 domain-containing transcription factor	-	2e-17	At5g65510	AIL7 (AINTEGUMENTA-like 7)	S.X.	H.G.	Please selecteFP Browser (expression)
0.63	88.1	Ptp.7103.1.S1_at	CV274394	hypothetical protein	-	2e+0	At1g11430	plastid developmental protein DAG, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.63	88.1	PtpAffx.19152.1.S1_at	CV274196	SAUR family protein	-	7e-1	At3g30768	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.52	79.4	PtpAffx.106173.1.S1_s_at	DN484577	hypothetical protein	-	5e+0	At5g45410	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.48	75.4	Ptp.3711.1.S1_s_at	DN493224	hypothetical protein	-	3e-5	At1g11540	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.46	73.7	PtpAffx.201827.1.S1_s_at	pmrna3641	hypothetical protein	-	8e-3	At1g31130	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.43	69.7	PtpAffx.215737.1.S1_at	pmrna30101	ABC transporter family, retinal flippase subfamily	-	2e-18	At5g61730	ATATH11	S.X.	H.G.	Please selecteFP Browser (expression)
0.42	68.6	PtpAffx.202166.1.S1_at	pmrna4333	hypothetical protein	-	2e-12	At2g45430	DNA-binding protein-related	S.X.	H.G.	Please selecteFP Browser (expression)
0.41	67.7	Ptp.7167.1.S1_s_at	DN497975	hypothetical protein	-	2e-4	At3g49220	pectinesterase family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.41	67.7	PtpAffx.68429.1.S1_a_at	DN493879	hypothetical protein	-	1e-8	At3g58710	WRKY69	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
15.4	99.5	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
10.2	99.0	GSM328562	Populus x canescens root hypoxia_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
9.3	98.8	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
6.5	97.8	GSM328565	Populus x canescens root hypoxia_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
6.2	97.6	GSM328483	Populus x canescens root control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
5.6	97.2	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
4.6	96.2	GSM328533	Populus x canescens root hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.2	95.6	GSM328563	Populus x canescens root hypoxia_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.8	94.9	GSM328566	Populus x canescens root hypoxia_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.7	94.7	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	1124	PtpAffx.209236.1.S1_at	pmrna18264	AP2 domain-containing transcription factor	-	2e-17	At5g65510	AIL7 (AINTEGUMENTA-like 7)	C.G.	S.X.	Please selecteFP Browser (expression)
0.94	0	868	PtpAffx.207798.1.S1_at	pmrna15500	AP2 domain-containing transcription factor	-	4e-77	At5g17430	BBM (BABY BOOM)	C.G.	S.X.	Please selecteFP Browser (expression)
0.94	0	868	PtpAffx.207798.1.S1_x_at	pmrna15500	AP2 domain-containing transcription factor	-	4e-77	At5g17430	BBM (BABY BOOM)	C.G.	S.X.	Please selecteFP Browser (expression)
0.40	6e-74	278	PtpAffx.203519.1.S1_at	pmrna6993	AP2 domain-containing transcription factor	-	2e-94	At1g51190	PLT2 (PLETHORA 2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.70	4e-47	188	PtpAffx.214377.1.S1_s_at	pmrna27977	AP2 domain-containing transcription factor /// AP2 domain-containing transcription factor	-	1e-24	At5g65510	AIL7 (AINTEGUMENTA-like 7)	C.G.	S.X.	Please selecteFP Browser (expression)
0.41	2e-40	167	PtpAffx.200171.1.S1_s_at	pmrna319	AP2 domain-containing transcription factor /// AP2 domain-containing transcription factor	-	1e-98	At1g51190	PLT2 (PLETHORA 2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.53	2e-21	103	PtpAffx.211416.1.S1_at	pmrna22372	AP2 domain-containing transcription factor	-	5e-71	At4g37750	ANT (AINTEGUMENTA)	C.G.	S.X.	Please selecteFP Browser (expression)
0.18	3e-20	99	PtpAffx.92908.1.S1_at	CK097943	AP2 domain-containing transcription factor	-	2e-9	At4g37750	ANT (AINTEGUMENTA)	C.G.	S.X.	Please selecteFP Browser (expression)
0.21	8e-18	91	PtpAffx.200485.1.S1_at	pmrna975	AP2 domain-containing transcription factor	-	6e-54	At1g72570	DNA binding / transcription factor	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.36	2e-17	89	Arabidopsis thaliana	At5g65510	836677	AIL7 (AINTEGUMENTA-like 7)	F:transcription factor activity, DNA binding;P:organ morphogenesis, regulation of transcription, DNA-dependent;C:nucleus;POB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.55	9e-33	141	Glycine max	GmaAffx.91601.1.S1_s_at	CF807326	-	-	1e-47	At5g57390	AIL5 (AINTEGUMENTA-LIKE 5)	C.G.	S.X.	Please select
0.03	2e+0	32	Hordeum vulgare	Contig15157_at	Contig15157	-	-	1e+0	At3g20370	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	C.G.	S.X.	Please select
0.32	3e-67	256	Oryza sativa	Os11g0295900	9639.m01770	-	Pathogenesis-related transcriptional factor andERF domain containing protein	1e-5	At5g65510	AIL7 (AINTEGUMENTA-like 7)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.16	1e-3	44	Triticum aestivum	TaAffx.64176.1.S1_at	BJ312281	-	-	8e-11	At1g72570	DNA binding / transcription factor	C.G.	S.X.	Please select
0.17	4e-13	73	Vitis vinifera	1621798_at	CF203395.1	-	-	1e-3	At5g65510	AIL7 (AINTEGUMENTA-like 7)	C.G.	S.X.	Please select
0.11	1e-10	65	Zea mays	Zm.123.1.S1_at	AY109146.1	heat shock complementing factor1	-	2e-5	At5g57390	AIL5 (AINTEGUMENTA-LIKE 5)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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