CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.209197.1.S1_at

Gene name ZIP transporter

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 91.1 PtpAffx.209197.1.S1_at pmrna18189 ZIP transporter - 5e-1 At5g62160 AtZIP12 (ZINC TRANSPORTER 12 PRECURSOR) S.X. H.G.
0.33 57.5 PtpAffx.203528.1.S1_at pmrna7012 cytokinin oxidase - 3e-28 At3g63440 CKX6 (CYTOKININ OXIDASE/DEHYDROGENASE 6) S.X. H.G.
0.21 36.5 PtpAffx.210754.1.S1_at pmrna21099 hypothetical protein - 4e-1 At2g19050 GDSL-motif lipase/hydrolase family protein S.X. H.G.
0.13 21.6 PtpAffx.207493.1.S1_at pmrna14878 hypothetical protein - 3e-5 At1g17750 leucine-rich repeat transmembrane protein kinase, putative S.X. H.G.
0.12 19.6 PtpAffx.201655.1.S1_s_at pmrna3288 GRAS family transcription factor /// GRAS family transcription factor - 4e-4 At5g41920 scarecrow transcription factor family protein S.X. H.G.
0.09 14.6 Ptp.6639.1.S1_at DN488065 hypothetical protein - 2e-3 At5g54790 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
9.9 98.9 GSM328557 Populus x canescens root control_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
6.0 97.5 GSM328284 Populus x canescens root control_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.4 97.0 GSM328560 Populus x canescens root control_rep_11 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.3 96.9 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
5.1 96.8 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
5.0 96.6 GSM328277 Populus x canescens root control_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.4 95.9 GSM328292 Populus x canescens root control_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.4 95.9 GSM328281 Populus x canescens root control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.3 95.8 GSM328534 Populus x canescens root control_rep_07 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.2 95.6 GSM328558 Populus x canescens root control_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.87 0 1104 PtpAffx.207835.1.S1_at pmrna15562 ZIP transporter - 2e-6 At5g62160 AtZIP12 (ZINC TRANSPORTER 12 PRECURSOR) C.G. S.X.
0.07 8e-10 65 PtpAffx.13774.1.S1_at CK091759 ZIP transporter - 9e-1 At3g25550 F-box family protein C.G. S.X.
0.12 5e-8 59 PtpAffx.205944.1.S1_s_at pmrna11796 ZIP transporter /// ZIP transporter /// ZIP transporter - 5e-10 At3g12750 ZIP1 (ZINC TRANSPORTER 1 PRECURSOR) C.G. S.X.
0.12 5e-8 59 PtpAffx.205944.1.S1_at pmrna11796 ZIP transporter - 5e-10 At3g12750 ZIP1 (ZINC TRANSPORTER 1 PRECURSOR) C.G. S.X.
0.08 3e-3 44 PtpAffx.24009.1.A1_at CV279164 - - 3e-2 At3g12750 ZIP1 (ZINC TRANSPORTER 1 PRECURSOR) C.G. S.X.
0.02 2e-1 38 PtpAffx.219359.1.S1_x_at pmrna35257 hypothetical protein - 1e+0 At1g10460 GLP7 (GERMIN-LIKE PROTEIN 7) C.G. S.X.
0.02 2e-1 38 PtpAffx.219359.1.S1_at pmrna35257 hypothetical protein - 1e+0 At1g10460 GLP7 (GERMIN-LIKE PROTEIN 7) C.G. S.X.
0.02 2e-1 38 PtpAffx.213777.1.S1_at pmrna26897 hypothetical protein - 3e-3 At1g61000 - C.G. S.X.
0.02 7e-1 36 PtpAffx.200153.1.S1_at pmrna289 hypothetical protein - 2e+0 At4g08910 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 5e-1 36 Arabidopsis thaliana At5g62160 836336 AtZIP12 (ZINC TRANSPORTER 12 PRECURSOR) member of Fe(II) transporter isolog family - - - C.G. S.X.
0.20 8e-10 65 Glycine max Gma.8453.1.S1_at AY029321.1 zinc transporter protein ZIP1 - 7e-19 At3g12750 ZIP1 (ZINC TRANSPORTER 1 PRECURSOR) C.G. S.X.
0.03 1e+0 34 Hordeum vulgare HW02H12u_x_at HW02H12u - - 1e+1 At5g20440 protein binding C.G. S.X.
0.04 3e-1 38 Oryza sativa Os04g0613000 AY323915.1 - Zinc transporter 1 precursor (ZRT/IRT-like protein1) 1e-2 At2g32270 ZIP3 C.G. S.X.
0.06 1e-1 38 Triticum aestivum TaAffx.106421.1.S1_at CD933478 zinc transporter ZIP - 3e+0 At5g62160 AtZIP12 (ZINC TRANSPORTER 12 PRECURSOR) C.G. S.X.
0.16 4e-11 67 Vitis vinifera 1618682_at CA814693 hypothetical protein LOC100255284 - 5e-5 At5g62160 AtZIP12 (ZINC TRANSPORTER 12 PRECURSOR) C.G. S.X.
0.02 4e-3 42 Zea mays Zm.17442.1.A1_at CK347197 hypothetical protein LOC100279110 - 6e+0 At3g54570 calmodulin-binding protein-related C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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