CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.2091.1.A1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.60 86.0 PtpAffx.2091.1.A1_at CK088284 hypothetical protein - 3e+0 At5g44060 unknown protein S.X. H.G.
0.80 96.0 PtpAffx.216070.1.S1_at pmrna30631 - - 2e-1 At5g38610 invertase/pectin methylesterase inhibitor family protein S.X. H.G.
0.71 92.6 PtpAffx.222924.1.S1_at pmrna40652 hypothetical protein - 1e+1 At3g01070 plastocyanin-like domain-containing protein S.X. H.G.
0.67 91.1 PtpAffx.218897.1.S1_at pmrna34642 hypothetical protein - 1e+1 At5g22440 60S ribosomal protein L10A (RPL10aC) S.X. H.G.
0.61 87.0 Ptp.1076.1.S1_at CK093557 - - 2e+0 At5g37670 15.7 kDa class I-related small heat shock protein-like (HSP15.7-CI) S.X. H.G.
0.40 67.0 PtpAffx.202197.1.S1_at pmrna4392 hypothetical protein - 3e+0 At5g65165 SDH2-3 S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
37.3 100.0 GSM362888 Clone1979_LPI5_N+_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
5.8 97.4 GSM362889 Clone1979_LPI5_N-_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.9 96.5 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
4.3 95.8 GSM327659 Populus balsamifera_Male_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
3.9 95.1 GSM327411 Populus balsamifera_1006_differentiating_xylem_midday_1 GSE13990 Populus balsamifera developmental tissue series
3.5 94.3 GSM327406 Populus balsamifera_1006_young_leaf_midday_3 GSE13990 Populus balsamifera developmental tissue series
3.1 93.2 GSM327281 Populus balsamifera_20071015_Seedling_continuous_light_6d_1 GSE13990 Populus balsamifera developmental tissue series
3.0 92.9 GSM327403 Populus balsamifera_20071015_Etiolated_seedling_6d_3 GSE13990 Populus balsamifera developmental tissue series
3.0 92.9 GSM372091 Clone3200_LPI2_N-_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.0 88.0 GSM327413 Populus balsamifera_1006_differentiating_xylem_midday_3 GSE13990 Populus balsamifera developmental tissue series
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.21 3e-29 127 PtpAffx.140926.1.S1_at CV239696 hypothetical protein - 2e-5 At5g39520 unknown protein C.G. S.X.
0.06 8e-2 36 PtpAffx.18283.1.S1_at AJ773318 - - 2e-1 At2g40995 - C.G. S.X.
0.06 3e-1 34 PtpAffx.249.837.A1_at CV250313 hypothetical protein - 5e+0 At5g08080 SYP132 (SYNTAXIN OF PLANTS 132) C.G. S.X.
0.03 5e+0 30 PtpAffx.95599.1.A1_at CV240515 hypothetical protein - 2e+0 At5g55200 co-chaperone grpE protein, putative C.G. S.X.
0.02 5e+0 30 PtpAffx.3477.2.S1_at AJ769221 hypothetical protein - 1e-5 At5g04670 - C.G. S.X.
0.05 5e+0 30 PtpAffx.221029.1.S1_at pmrna37572 hypothetical protein - 9e-1 At5g54680 ILR3 (iaa-leucine resistant3) C.G. S.X.
0.01 5e+0 30 PtpAffx.220123.1.S1_at pmrna36464 hypothetical protein - 5e-18 At4g19450 nodulin-related C.G. S.X.
0.02 5e+0 30 PtpAffx.213248.1.S1_at pmrna25909 hypothetical protein - 2e-10 At2g32560 F-box family protein C.G. S.X.
0.06 5e+0 30 PtpAffx.202142.1.S1_at pmrna4281 hypothetical protein - 8e-1 At2g45180 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 3e+0 30 Arabidopsis thaliana At5g44060 834429 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P - - - C.G. S.X.
0.07 1e+0 32 Glycine max Gma.6238.1.S1_at BQ612387 - - 2e+0 At2g39010 PIP2E (PLASMA MEMBRANE INTRINSIC PROTEIN 2E) C.G. S.X.
0.06 7e+0 28 Hordeum vulgare HVSMEn0025E24r2_at HVSMEn0025E24r2 - - 3e+0 At1g61750 - C.G. S.X.
0.10 7e+0 30 Oryza sativa Os07g0226700 9635.m01218 - - 1e+0 At3g15750 unknown protein C.G. S.X.
0.10 2e-1 34 Triticum aestivum Ta.17680.1.S1_at CA623583 - - 8e+0 At1g76405 unknown protein C.G. S.X.
0.03 4e+0 28 Vitis vinifera 1620475_at CF205959.1 similar to MAP1D (METHIONINE AMINOPEPTIDASE 1D); metalloexopeptidase - 7e-74 At4g37040 MAP1D (METHIONINE AMINOPEPTIDASE 1D) C.G. S.X.
0.04 6e+0 28 Zea mays Zm.6728.1.A1_at CN844413 hydroxymethylglutaryl-CoA lyase - 4e-1 At1g62490 mitochondrial transcription termination factor-related / mTERF-related C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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