CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.209028.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 99.2 PtpAffx.209028.1.S1_at pmrna17878 hypothetical protein - 8e-1 At1g72260 THI2.1 (THIONIN 2.1) S.X. H.G.
0.60 86.0 PtpAffx.208681.1.S1_at pmrna17218 hypothetical protein - 2e-3 At1g10710 - S.X. H.G.
0.46 73.7 PtpAffx.212630.1.S1_s_at pmrna24725 hypothetical protein - 2e-2 At5g61930 APO3 (ACCUMULATION OF PHOTOSYSTEM ONE 3) S.X. H.G.
0.38 63.7 PtpAffx.249.292.A1_at CV260437 hypothetical protein - 3e-2 At2g47400 CP12-1 S.X. H.G.
0.35 59.7 PtpAffx.42652.1.S1_at CV268229 histone H3 - 1e-1 At1g01370 HTR12 S.X. H.G.
0.13 21.6 PtpAffx.221050.1.S1_x_at pmrna37608 - - 1e-1 At4g27590 copper-binding protein-related S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
26.2 99.9 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
7.0 98.0 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
5.4 97.0 GSM362889 Clone1979_LPI5_N-_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.0 95.3 GSM372090 Clone3200_LPI2_N+_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.2 93.5 GSM334225 Populus balsamifera_1006_mature_leaf_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.8 92.1 GSM372095 Clone3200_LPI5_N-_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.2 89.3 GSM362888 Clone1979_LPI5_N+_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.9 87.2 GSM334224 Populus balsamifera_1006_mature_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
1.8 86.4 GSM372093 Clone3200_LPI5_N+_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.7 85.5 GSM327659 Populus balsamifera_Male_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.08 7e-36 153 PtpAffx.69106.1.S1_at CV270026 - - 2e+0 At1g36622 unknown protein C.G. S.X.
0.42 7e-36 153 PtpAffx.209024.1.S1_at pmrna17874 hypothetical protein - 8e-1 At5g41050 unknown protein C.G. S.X.
0.10 3e-32 141 PtpAffx.374.6.A1_at CV253352 - - 4e+0 At5g59340 WOX2 (WUSCHEL RELATED HOMEOBOX 2) C.G. S.X.
0.07 4e-31 137 PtpAffx.374.5.S1_at CV245835 hypothetical protein - 8e-18 At4g01710 CRK (CROOKED) C.G. S.X.
0.07 2e-30 135 PtpAffx.18539.1.A1_at CV243251 - - 2e+0 At3g28600 ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding C.G. S.X.
0.08 2e-27 125 PtpAffx.88938.1.A1_at CV245325 - - 2e+0 At5g24170 - C.G. S.X.
0.09 2e-27 125 PtpAffx.225480.1.S1_at pmrna44850 hypothetical protein - 4e+0 At4g03960 tyrosine specific protein phosphatase family protein C.G. S.X.
0.09 6e-27 123 Ptp.3575.1.S1_at BU811318 hypothetical protein - 1e+0 At3g56710 SIB1 (SIGMA FACTOR BINDING PROTEIN 1) C.G. S.X.
0.31 1e-25 119 PtpAffx.212127.1.S1_s_at pmrna23785 cytochrome P450 /// cytochrome P450 /// cytochrome P450 /// cytochrome P450 - 7e-1 At4g37010 caltractin, putative / centrin, putative C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 8e-1 36 Arabidopsis thaliana At1g72260 843558 THI2.1 (THIONIN 2.1) Encodes a thionin which is a cysteine rich protein having antimicrobial properties. Thi2.1 is expressed in response to a variety of pathogens and induced by ethylene and jasmonic acid. Belongs to the plant thionin (PR-13) family with the following members: At1g66100, At5g36910, At1g72260, At2g15010, At1g12663, At1g12660. - - - C.G. S.X.
0.02 1e+0 36 Glycine max GmaAffx.60335.1.S1_at BM891701 - - 3e+0 At3g23637 DVL21 (DEVIL 21) C.G. S.X.
0.02 2e+0 34 Hordeum vulgare HW09G07u_x_at HW09G07u - - 2e-1 At2g40210 AGL48 (AGAMOUS-LIKE 48) C.G. S.X.
0.01 2e+0 36 Oryza sativa Os03g0191200 AK070228.1 - WW/Rsp5/WWP domain containing protein 4e-2 At1g78170 unknown protein C.G. S.X.
0.02 3e+0 34 Triticum aestivum TaAffx.5299.1.S1_at CA715683 - - 8e+0 At5g01849 unknown protein C.G. S.X.
0.04 3e-4 46 Vitis vinifera 1607717_at CF511303 - - 7e-2 At1g27385 unknown protein C.G. S.X.
0.02 1e+0 34 Zea mays Zm.10456.1.S1_at BQ577859 hypothetical protein LOC100277504 - 8e+0 At2g21880 ATRAB7A C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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