Gene omics information

Query gene ID PtpAffx.208983.1.S1_s_at
Gene name hypothetical protein
Organism Populus trichocarpa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.7794.9PtpAffx.208983.1.S1_s_atpmrna17803hypothetical protein-3e-2At1g68765IDA (INFLORESCENCE DEFICIENT IN ABSCISSION)S.X.H.G.
0.5078.6PtpAffx.208173.1.S1_x_atpmrna16258autoinhibited calcium ATPase-7e-55At3g22910calcium-transporting ATPase, plasma membrane-type, putative / Ca(2+)-ATPase, putative (ACA13)S.X.H.G.
0.5078.6PtpAffx.208173.1.S1_atpmrna16258autoinhibited calcium ATPase-7e-55At3g22910calcium-transporting ATPase, plasma membrane-type, putative / Ca(2+)-ATPase, putative (ACA13)S.X.H.G.
0.3661.6PtpAffx.54694.1.A1_atDN491842hypothetical protein-3e-11At3g10320transferase, transferring glycosyl groupsS.X.H.G.
0.1729.1Ptp.8113.2.S1_a_atCV273417hypothetical protein-6e-9At1g55020LOX1S.X.H.G.
0.1729.1PtpAffx.209973.1.S1_atpmrna19675hypothetical protein-4e-2At5g35338-S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
15.999.6GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
10.499.0GSM328483Populus x canescens root control_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplar
7.698.3GSM328565Populus x canescens root hypoxia_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplar
6.898.0GSM328567Populus x canescens root hypoxia_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplar
6.297.6GSM328562Populus x canescens root hypoxia_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplar
6.197.6GSM328564Populus x canescens root hypoxia_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplar
6.097.5GSM136936Poplar in 1 x hrp + 0.25 % sucrose no bacteriaGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
4.495.9GSM328533Populus x canescens root hypoxia_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplar
3.694.5GSM328484Populus x canescens root hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplar
3.393.7GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue series
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
1.001e-162571PtpAffx.208983.1.S1_atpmrna17803hypothetical protein-3e-2At1g68765IDA (INFLORESCENCE DEFICIENT IN ABSCISSION)C.G.S.X.
0.042e-136PtpAffx.34051.1.S1_atDN491877hypothetical protein-8e+0At5g44568unknown proteinC.G.S.X.
0.022e-136PtpAffx.205735.1.S1_atpmrna11312histone acetyltransferase-7e-115At3g54610GCN5C.G.S.X.
0.017e-134PtpAffx.223149.1.S1_atpmrna41007cc-nbs-lrr resistance protein-9e-3At5g58490cinnamoyl-CoA reductase familyC.G.S.X.
0.017e-134PtpAffx.223149.1.S1_x_atpmrna41007cc-nbs-lrr resistance protein-9e-3At5g58490cinnamoyl-CoA reductase familyC.G.S.X.
0.017e-134PtpAffx.221574.1.S1_atpmrna38526hypothetical protein-1e-3At1g01580FRO2 (FERRIC REDUCTION OXIDASE 2)C.G.S.X.
0.027e-134PtpAffx.220293.1.S1_s_atpmrna36663cc-nbs-lrr resistance protein /// hypothetical protein-3e+0At3g01327-C.G.S.X.
0.027e-134PtpAffx.211316.1.S1_atpmrna22191hypothetical protein-8e-4At5g40630ubiquitin family proteinC.G.S.X.
0.017e-134PtpAffx.205394.1.S1_atpmrna10683hypothetical protein-1e-28At2g22560-C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.153e-238Arabidopsis thalianaAt1g68765843208IDA (INFLORESCENCE DEFICIENT IN ABSCISSION)Encodes a small protein of 77 amino acids. Loss of function mutations are defective in the process of ethylene independent floral organ abscission. Although the mutants have a normal appearing abscission zone, the floral organs do not abscisce. The peptide appears to be secreted and may function as a ligand. Arabidopsis 35S:IDA lines constitutively overexpressing IDA exhibit earlier abscission of floral organs, showing that the abscission zones are responsive to IDA soon after the opening of the flowers. In addition, ectopic abscission was observed at the bases of the pedicel, branches of the inflorescence, and cauline leaves. The silique valves also dehisced prematurely.---C.G.S.X.
0.053e+032Glycine maxGmaAffx.86316.1.S1_atBM521827--1e+0At3g27460unknown proteinC.G.S.X.
0.054e+030Hordeum vulgareContig20372_atContig20372--5e+0At4g16750DRE-binding transcription factor, putativeC.G.S.X.
0.024e+032Oryza sativaOs06g06606009634.m00177-Homeodomain-like containing protein2e-1At2g19540transducin family protein / WD-40 repeat family proteinC.G.S.X.
0.062e+032Triticum aestivumTa.16128.1.S1_atCA600355--2e+0At5g26630MADS-box protein (AGL35)C.G.S.X.
0.052e-134Vitis vinifera1615246_atCF371892hypothetical protein LOC100247907-7e-1At4g28640IAA11 (INDOLE-3-ACETIC ACID INDUCIBLE 11)C.G.S.X.
0.044e+030Zea maysZm.4524.1.A1_atCD971358--1e+1At4g00420double-stranded RNA-binding domain (DsRBD)-containing proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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