Gene omics information

Query gene ID	PtpAffx.208968.1.S1_s_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.39	64.6	PtpAffx.208968.1.S1_s_at	pmrna17776	hypothetical protein	-	1e-77	At1g25540	PFT1 (PHYTOCHROME AND FLOWERING TIME 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.53	80.5	PtpAffx.21453.1.S1_s_at	CK099414	hypothetical protein	-	3e-8	At2g30800	HVT1 (HELICASE IN VASCULAR TISSUE AND TAPETUM)	S.X.	H.G.	Please selecteFP Browser (expression)
0.47	74.6	PtpAffx.6384.1.A1_s_at	CA933521	hypothetical protein	-	8e-21	At3g05010	transmembrane protein, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.46	73.7	PtpAffx.201293.1.S1_s_at	pmrna2565	hypothetical protein	-	2e-110	At1g70320	UPL2 (UBIQUITIN-PROTEIN LIGASE 2)	S.X.	H.G.	Please selecteFP Browser (expression)
0.40	67.0	Ptp.6476.3.S1_s_at	CX170246	hypothetical protein	-	1e-59	At1g64230	ubiquitin-conjugating enzyme, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.36	61.6	Ptp.5404.1.S1_s_at	CV247987	hypothetical protein	-	2e-24	At4g05000	VPS28-2	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.6	94.5	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.8	92.1	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM244431	non infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.6	91.3	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM244438	Mmd infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.0	88.0	GSM244435	Mlp infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.0	88.0	GSM244430	non infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.9	87.2	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
1.9	87.2	GSM328561	Populus x canescens root control_rep_12	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM328285	Populus x canescens root control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.59	0	906	PtpAffx.208002.1.S1_x_at	pmrna15881	hypothetical protein	-	2e-59	At1g25540	PFT1 (PHYTOCHROME AND FLOWERING TIME 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.52	0	763	PtpAffx.124648.1.S1_s_at	BU831703	hypothetical protein	-	6e-7	At1g25540	PFT1 (PHYTOCHROME AND FLOWERING TIME 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.22	2e-132	474	PtpAffx.208001.1.S1_at	pmrna15880	hypothetical protein	-	1e-11	At1g25540	PFT1 (PHYTOCHROME AND FLOWERING TIME 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.22	2e-132	474	PtpAffx.208001.1.S1_x_at	pmrna15880	hypothetical protein	-	1e-11	At1g25540	PFT1 (PHYTOCHROME AND FLOWERING TIME 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.10	4e-63	244	PtpAffx.57302.1.A1_at	CV231317	-	-	1e+0	At1g63206	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.07	8e-52	206	Ptp.1749.1.A1_at	CK093645	-	-	7e+0	At5g44560	VPS2.2	C.G.	S.X.	Please selecteFP Browser (expression)
0.07	3e-48	194	PtpAffx.208003.1.S1_at	pmrna15882	hypothetical protein	-	5e+0	At3g56890	F-box family protein-related	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	4e-1	38	PtpAffx.213306.1.S1_at	pmrna26027	hypothetical protein	-	8e-18	At5g06839	bZIP family transcription factor	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	2e+0	36	PtpAffx.90535.1.S1_at	CF231287	hypothetical protein	-	1e+0	At2g30220	GDSL-motif lipase/hydrolase family protein	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.21	1e-77	291	Arabidopsis thaliana	At1g25540	839141	PFT1 (PHYTOCHROME AND FLOWERING TIME 1)	Encodes a nuclear protein that acts in a phyB pathway (but downstream of phyB) and induces flowering in response to suboptimal light conditions. Mutants are hypo-responsive to far-red and hyper-responsive to red light and flower late under long day conditions.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.28	1e-93	345	Glycine max	GmaAffx.85901.1.S1_at	BF069141	-	-	3e-35	At1g25540	PFT1 (PHYTOCHROME AND FLOWERING TIME 1)	C.G.	S.X.	Please select
0.11	3e-18	93	Hordeum vulgare	Contig13671_at	Contig13671	-	-	1e-14	At1g25540	PFT1 (PHYTOCHROME AND FLOWERING TIME 1)	C.G.	S.X.	Please select
0.01	6e-1	38	Oryza sativa	OsAffx.29850.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.08	1e-9	65	Triticum aestivum	TaAffx.122320.1.S1_at	BQ620251	-	-	2e-8	At1g25540	PFT1 (PHYTOCHROME AND FLOWERING TIME 1)	C.G.	S.X.	Please select
0.01	1e+0	34	Vitis vinifera	1614864_at	CB349009	hypothetical protein LOC100252651	-	2e+0	At3g04250	F-box family protein-related	C.G.	S.X.	Please select
0.04	2e-6	54	Zea mays	Zm.4762.1.A1_at	BG874087	-	-	2e-6	At1g25540	PFT1 (PHYTOCHROME AND FLOWERING TIME 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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