Gene omics information

Query gene ID PtpAffx.208968.1.S1_s_at
Gene name hypothetical protein
Organism Populus trichocarpa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.3964.6PtpAffx.208968.1.S1_s_atpmrna17776hypothetical protein-1e-77At1g25540PFT1 (PHYTOCHROME AND FLOWERING TIME 1)S.X.H.G.
0.5380.5PtpAffx.21453.1.S1_s_atCK099414hypothetical protein-3e-8At2g30800HVT1 (HELICASE IN VASCULAR TISSUE AND TAPETUM)S.X.H.G.
0.4774.6PtpAffx.6384.1.A1_s_atCA933521hypothetical protein-8e-21At3g05010transmembrane protein, putativeS.X.H.G.
0.4673.7PtpAffx.201293.1.S1_s_atpmrna2565hypothetical protein-2e-110At1g70320UPL2 (UBIQUITIN-PROTEIN LIGASE 2)S.X.H.G.
0.4067.0Ptp.6476.3.S1_s_atCX170246hypothetical protein-1e-59At1g64230ubiquitin-conjugating enzyme, putativeS.X.H.G.
0.3661.6Ptp.5404.1.S1_s_atCV247987hypothetical protein-2e-24At4g05000VPS28-2S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
3.694.5GSM327408Populus balsamifera_1006_root_midday_2GSE13990Populus balsamifera developmental tissue series
2.892.1GSM327407Populus balsamifera_1006_root_midday_1GSE13990Populus balsamifera developmental tissue series
2.791.8GSM244431non infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.691.3GSM327409Populus balsamifera_1006_root_midday_3GSE13990Populus balsamifera developmental tissue series
2.389.8GSM244438Mmd infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.088.0GSM244435Mlp infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.088.0GSM244430non infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.987.2GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
1.987.2GSM328561Populus x canescens root control_rep_12GSE13109Effect of hypoxia on gene expression in Grey poplar
1.987.2GSM328285Populus x canescens root control_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplar
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.590906PtpAffx.208002.1.S1_x_atpmrna15881hypothetical protein-2e-59At1g25540PFT1 (PHYTOCHROME AND FLOWERING TIME 1)C.G.S.X.
0.520763PtpAffx.124648.1.S1_s_atBU831703hypothetical protein-6e-7At1g25540PFT1 (PHYTOCHROME AND FLOWERING TIME 1)C.G.S.X.
0.222e-132474PtpAffx.208001.1.S1_atpmrna15880hypothetical protein-1e-11At1g25540PFT1 (PHYTOCHROME AND FLOWERING TIME 1)C.G.S.X.
0.222e-132474PtpAffx.208001.1.S1_x_atpmrna15880hypothetical protein-1e-11At1g25540PFT1 (PHYTOCHROME AND FLOWERING TIME 1)C.G.S.X.
0.104e-63244PtpAffx.57302.1.A1_atCV231317--1e+0At1g63206-C.G.S.X.
0.078e-52206Ptp.1749.1.A1_atCK093645--7e+0At5g44560VPS2.2C.G.S.X.
0.073e-48194PtpAffx.208003.1.S1_atpmrna15882hypothetical protein-5e+0At3g56890F-box family protein-relatedC.G.S.X.
0.014e-138PtpAffx.213306.1.S1_atpmrna26027hypothetical protein-8e-18At5g06839bZIP family transcription factorC.G.S.X.
0.012e+036PtpAffx.90535.1.S1_atCF231287hypothetical protein-1e+0At2g30220GDSL-motif lipase/hydrolase family proteinC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.211e-77291Arabidopsis thalianaAt1g25540839141PFT1 (PHYTOCHROME AND FLOWERING TIME 1)Encodes a nuclear protein that acts in a phyB pathway (but downstream of phyB) and induces flowering in response to suboptimal light conditions. Mutants are hypo-responsive to far-red and hyper-responsive to red light and flower late under long day conditions.---C.G.S.X.
0.281e-93345Glycine maxGmaAffx.85901.1.S1_atBF069141--3e-35At1g25540PFT1 (PHYTOCHROME AND FLOWERING TIME 1)C.G.S.X.
0.113e-1893Hordeum vulgareContig13671_atContig13671--1e-14At1g25540PFT1 (PHYTOCHROME AND FLOWERING TIME 1)C.G.S.X.
0.016e-138Oryza sativaOsAffx.29850.1.S1_at---0C.G.S.X.
0.081e-965Triticum aestivumTaAffx.122320.1.S1_atBQ620251--2e-8At1g25540PFT1 (PHYTOCHROME AND FLOWERING TIME 1)C.G.S.X.
0.011e+034Vitis vinifera1614864_atCB349009hypothetical protein LOC100252651-2e+0At3g04250F-box family protein-relatedC.G.S.X.
0.042e-654Zea maysZm.4762.1.A1_atBG874087--2e-6At1g25540PFT1 (PHYTOCHROME AND FLOWERING TIME 1)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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