Gene omics information

Query gene ID	PtpAffx.208892.1.S1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.60	86.0	PtpAffx.208892.1.S1_at	pmrna17641	hypothetical protein	-	6e-5	At1g71040	LPR2 (Low Phosphate Root2)	S.X.	H.G.	Please selecteFP Browser (expression)
0.56	83.9	PtpAffx.126036.1.S1_at	BP926823	-	-	8e-1	At3g11020	DREB2B (DRE/CRT-BINDING PROTEIN 2B)	S.X.	H.G.	Please selecteFP Browser (expression)
0.55	82.2	PtpAffx.79084.1.S1_at	BU889361	hypothetical protein	-	2e-18	At5g03880	electron carrier	S.X.	H.G.	Please selecteFP Browser (expression)
0.40	67.0	PtpAffx.139489.1.S1_s_at	BU880707	hypothetical protein	-	1e+0	At1g53620	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.27	47.1	PtpAffx.10990.1.S1_at	CV271402	hypothetical protein	-	6e-82	At1g67280	lactoylglutathione lyase, putative / glyoxalase I, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.25	43.6	PtpAffx.221342.1.S1_at	pmrna38177	hypothetical protein	-	1e-20	At4g10000	electron carrier/ protein disulfide oxidoreductase	S.X.	H.G.	Please selecteFP Browser (expression)
0.22	38.3	PtpAffx.120315.1.S1_at	CX171118	hypothetical protein	-	5e-16	At3g30200	-	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
8.6	98.6	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
7.1	98.1	GSM362886	Clone1979_LPI2_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
5.3	96.9	GSM372095	Clone3200_LPI5_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.4	95.9	GSM372094	Clone3200_LPI5_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.3	95.8	GSM362885	Clone1979_LPI2_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.2	95.6	GSM372097	Clone3200_LPI5_N-_8w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.2	95.6	GSM372044	Clone1979_LPI5_N+_8w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.8	94.9	GSM372093	Clone3200_LPI5_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.7	94.7	GSM372098	Clone3200_LPI5_N-_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.6	94.5	GSM362890	Clone1979_LPI5_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.45	0	963	PtpAffx.221011.1.S1_s_at	pmrna37540	hypothetical protein	-	4e-3	At1g71040	LPR2 (Low Phosphate Root2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.23	2e-98	361	PtpAffx.104662.1.S1_at	DN486337	hypothetical protein	-	4e+0	At2g02570	nucleic acid binding	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	1e+0	36	PtpAffx.25342.3.S1_s_at	CK091631	hypothetical protein	-	3e-29	At5g20990	B73	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	1e+0	36	PtpAffx.218019.1.S1_at	pmrna33519	flavonoid o-methyltransferase related	-	2e-3	At4g35150	O-methyltransferase family 2 protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	1e+0	36	PtpAffx.216222.1.S1_at	pmrna30872	hypothetical protein	-	2e+1	At5g10390	histone H3	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	1e+0	36	PtpAffx.213240.1.S1_at	pmrna25891	hypothetical protein	-	4e-1	At5g05130	SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	1e+0	36	PtpAffx.213233.1.S1_at	pmrna25882	chromatin remodeling complex subunit	-	3e-1	At5g05130	SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	1e+0	36	PtpAffx.213236.1.S1_s_at	pmrna25887	chromatin remodeling complex subunit	-	3e-1	At5g05130	SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	1e+0	36	PtpAffx.213240.1.S1_s_at	pmrna25891	chromatin remodeling complex subunit /// hypothetical protein	-	4e-1	At5g05130	SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.16	6e-5	50	Arabidopsis thaliana	At1g71040	843444	LPR2 (Low Phosphate Root2)	F:oxidoreductase activity, copper ion binding;P:cellular response to phosphate starvation;C:cell wall, membrane;BPOFMA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.21	5e-12	73	Glycine max	GmaAffx.22261.1.S1_at	BU550793	-	-	2e-3	At1g23010	LPR1 (Low Phosphate Root1)	C.G.	S.X.	Please select
0.05	3e-11	69	Hordeum vulgare	Contig9797_at	Contig9797	-	-	1e-2	At1g23010	LPR1 (Low Phosphate Root1)	C.G.	S.X.	Please select
0.03	2e+0	36	Oryza sativa	Os01g0127100	AK106749.1	-	Conserved hypothetical protein	3e+0	At5g15254	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	9e-1	36	Triticum aestivum	Ta.10502.1.S1_at	BQ172454	-	-	2e+0	At4g22800	unknown protein	C.G.	S.X.	Please select
0.12	6e-27	121	Vitis vinifera	1620194_a_at	CD011688	hypothetical protein LOC100266384	-	3e-7	At1g71040	LPR2 (Low Phosphate Root2)	C.G.	S.X.	Please select
0.02	4e-1	36	Zea mays	Zm.2436.1.A1_at	AW202512	-	-	5e+0	At5g55856	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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