CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.208727.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.32 55.2 PtpAffx.208727.1.S1_at pmrna17304 hypothetical protein - 3e+0 At4g13400 unknown protein S.X. H.G.
0.30 52.0 PtpAffx.215438.1.S1_at pmrna29629 fasciclin-like arabinogalactan protein - 1e-1 At5g11740 AGP15 (ARABINOGALACTAN PROTEIN 15) S.X. H.G.
0.27 47.1 PtpAffx.28042.1.S1_at CK097820 - - 2e+0 At2g19330 leucine-rich repeat family protein S.X. H.G.
0.06 9.8 PtpAffx.222883.1.S1_at pmrna40590 hypothetical protein - 5e+0 At5g62960 unknown protein S.X. H.G.
0.05 8.3 PtpAffx.209820.1.S1_at pmrna19361 hypothetical protein - 2e-3 At5g55540 TRN1 (TORNADO 1) S.X. H.G.
0.01 2.2 Ptp.1077.1.A1_at CK090363 hypothetical protein - 6e-1 At4g31510 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
10.0 98.9 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
10.0 98.9 GSM334226 Populus balsamifera_1006_mature_leaf_midday_3 GSE13990 Populus balsamifera developmental tissue series
5.7 97.3 GSM334225 Populus balsamifera_1006_mature_leaf_midday_2 GSE13990 Populus balsamifera developmental tissue series
4.3 95.8 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.8 92.1 GSM362890 Clone1979_LPI5_N-_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.6 91.3 GSM327659 Populus balsamifera_Male_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.4 90.4 GSM327409 Populus balsamifera_1006_root_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.1 88.6 GSM328557 Populus x canescens root control_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.1 88.6 GSM328062 Populus x canescens leaf control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.9 87.2 GSM328484 Populus x canescens root hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.13 2e-2 40 PtpAffx.216360.1.S1_at pmrna31080 hypothetical protein - 7e-2 At2g31840 - C.G. S.X.
0.04 2e-2 40 PtpAffx.204422.1.S1_at pmrna8694 - - 1e-1 At4g14480 protein kinase family protein C.G. S.X.
0.02 3e-1 36 PtpAffx.59090.1.A1_at CV283598 hypothetical protein - 2e-74 At3g09570 - C.G. S.X.
0.03 3e-1 36 PtpAffx.213308.1.S1_at pmrna26030 hypothetical protein - 1e-2 At1g79640 ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase C.G. S.X.
0.02 3e-1 36 PtpAffx.210048.1.S1_s_at pmrna19794 hypothetical protein - 2e-47 At5g54780 RAB GTPase activator C.G. S.X.
0.02 3e-1 36 PtpAffx.210048.1.S1_at pmrna19794 hypothetical protein - 2e-47 At5g54780 RAB GTPase activator C.G. S.X.
0.04 3e-1 36 PtpAffx.208189.1.S1_at pmrna16295 hypothetical protein - 7e-3 At4g14480 protein kinase family protein C.G. S.X.
0.01 3e-1 36 PtpAffx.200268.1.S1_at pmrna526 hypothetical protein - 1e-25 At5g13390 NEF1 (NO EXINE FORMATION 1) C.G. S.X.
0.03 1e+0 34 PtpAffx.50176.2.S1_a_at CV256175 hypothetical protein - 1e-16 At2g26830 emb1187 (embryo defective 1187) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 3e+0 32 Arabidopsis thaliana At4g13400 826971 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;FBOPM - - - C.G. S.X.
0.03 3e-1 36 Glycine max PsAffx.C5000084_at PsAffx.C5000084 - - 2e+0 At3g20180 metal ion binding C.G. S.X.
0.03 2e+0 32 Hordeum vulgare Contig21669_at Contig21669 - - 5e+0 At4g35690 unknown protein C.G. S.X.
0.06 4e-1 36 Oryza sativa OsAffx.13959.1.S1_at - - - 0 C.G. S.X.
0.04 8e-1 34 Triticum aestivum TaAffx.128663.2.S1_at CA659478 WRKY transcription factor - 3e-1 At1g76200 unknown protein C.G. S.X.
0.04 9e-1 32 Vitis vinifera 1616028_at CF403915 - - 3e-4 At3g19810 unknown protein C.G. S.X.
0.03 5e+0 30 Zea mays Zm.9355.1.A1_at BM268784 - - 1e+1 At5g19729 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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