Gene omics information

Query gene ID PtpAffx.208714.1.S1_at
Gene name AP2/ERF domain-containing transcription factor
Organism Populus trichocarpa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.6991.5PtpAffx.208714.1.S1_atpmrna17280AP2/ERF domain-containing transcription factor-6e-9At3g23240ERF1 (ETHYLENE RESPONSE FACTOR 1)S.X.H.G.
0.6791.1PtpAffx.213748.1.S1_atpmrna26838hypothetical protein-8e-3At1g73000-S.X.H.G.
0.5984.9PtpAffx.223108.1.S1_atpmrna40930hypothetical protein-2e-1At1g66460protein kinase family proteinS.X.H.G.
0.5884.2PtpAffx.213392.1.S1_atpmrna26200hypothetical protein-3e-11At3g52400SYP122 (SYNTAXIN OF PLANTS 122)S.X.H.G.
0.5884.2PtpAffx.34391.1.S1_atBU823985hypothetical protein-3e-22At4g25970PSD3 (phosphatidylserine decarboxylase 3)S.X.H.G.
0.5279.4PtpAffx.209332.1.S1_atpmrna18462hypothetical protein-4e+0At4g33980unknown proteinS.X.H.G.
0.5078.6PtpAffx.94220.1.A1_atCX179354hypothetical protein-6e-13At2g42010PLDBETA1 (PHOSPHOLIPASE D BETA 1)S.X.H.G.
0.4774.6PtpAffx.151801.1.A1_atCV243964hypothetical protein-2e+0At5g35580ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinaseS.X.H.G.
0.4774.6PtpAffx.201939.1.S1_s_atpmrna3866hypothetical protein-2e-1At5g14440-S.X.H.G.
0.4471.9PtpAffx.214127.1.S1_s_atpmrna27497hypothetical protein-3e+0At5g53270seed maturation family proteinS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
48.2100.0GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
8.198.5GSM328533Populus x canescens root hypoxia_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplar
7.898.4GSM328484Populus x canescens root hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplar
3.494.0GSM136936Poplar in 1 x hrp + 0.25 % sucrose no bacteriaGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.590.9GSM244441Mixed infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.886.4GSM328281Populus x canescens root control_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplar
1.785.5GSM328532Populus x canescens root hypoxia_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplar
1.482.3GSM244439Mixed infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.279.6GSM328562Populus x canescens root hypoxia_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplar
1.178.0GSM327658Populus balsamifera_Female_Catkin_midday_3GSE13990Populus balsamifera developmental tissue series
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.154e-26119PtpAffx.81893.1.A1_atCV268920AP2/ERF domain-containing transcription factor-2e-6At3g23240ERF1 (ETHYLENE RESPONSE FACTOR 1)C.G.S.X.
0.148e-1271PtpAffx.201660.1.S1_atpmrna3314AP2/ERF domain-containing transcription factor-2e-3At3g23220DNA binding / transcription factorC.G.S.X.
0.152e-963PtpAffx.95030.1.A1_atCV262586AP2/ERF domain-containing transcription factor-7e-6At4g18450ethylene-responsive factor, putativeC.G.S.X.
0.163e-550PtpAffx.218026.1.S1_atpmrna33534AP2/ERF domain-containing transcription factor-3e-3At4g18450ethylene-responsive factor, putativeC.G.S.X.
0.173e-550PtpAffx.102470.1.S1_atCV130573AP2/ERF domain-containing transcription factor-1e-1At4g17500ATERF-1 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1)C.G.S.X.
0.055e-446PtpAffx.221102.1.S1_atpmrna37699AP2/ERF domain-containing transcription factor-2e-1At3g23230ethylene-responsive factor, putativeC.G.S.X.
0.042e-344PtpAffx.221100.1.S1_atpmrna37697AP2/ERF domain-containing transcription factor-9e-20At2g44840ERF13 (ETHYLENE-RESPONSIVE ELEMENT BINDING FACTOR 13)C.G.S.X.
0.082e-344PtpAffx.1196.1.S1_atCV240933AP2/ERF domain-containing transcription factor-5e-1At1g71130AP2 domain-containing transcription factor, putativeC.G.S.X.
0.047e-342PtpAffx.35739.1.S1_atBP934264AP2/ERF domain-containing transcription factor-1e-14At5g47220ERF2 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 2)C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.166e-961Arabidopsis thalianaAt3g23240821902ERF1 (ETHYLENE RESPONSE FACTOR 1)encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family (ERF1). The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5. EREBP like protein that binds GCC box of ethylene regulated promoters such as basic chitinases. Constitutive expression of ERF1 phenocopies ethylene over production. Involved in ethylene signaling cascade,downstream of EIN2 and EIN3.---C.G.S.X.
0.123e-859Glycine maxGmaAffx.5978.1.S1_atBU548662--8e-6At1g06160ORA59 (OCTADECANOID-RESPONSIVE ARABIDOPSIS AP2/ERF 59)C.G.S.X.
0.033e+032Hordeum vulgareContig4056_atContig4056--7e-2At1g64185lactoylglutathione lyase family protein / glyoxalase I family proteinC.G.S.X.
0.052e-138Oryza sativaOsAffx.6536.1.S1_at---0C.G.S.X.
0.041e+034Triticum aestivumTaAffx.4409.1.S1_atCA742633--6e-5At1g50950thioredoxin-relatedC.G.S.X.
0.043e-238Vitis vinifera1613698_atCF403989hypothetical protein LOC100242632-7e-6At5g51190AP2 domain-containing transcription factor, putativeC.G.S.X.
0.036e-134Zea maysZm.943.1.A1_atBF729547CID11-1e+0At5g42240scpl42 (serine carboxypeptidase-like 42)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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