Gene omics information

Query gene ID	PtpAffx.208712.1.S1_at
Gene name	high affinity inorganic phosphate transporter
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.73	93.6	PtpAffx.208712.1.S1_at	pmrna17276	high affinity inorganic phosphate transporter	-	2e-11	At5g43350	PHT1	S.X.	H.G.	Please selecteFP Browser (expression)
0.80	96.0	Ptp.7170.1.S1_s_at	DN497999	hypothetical protein	-	1e+0	At1g69760	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.80	96.0	PtpAffx.209991.1.S1_at	pmrna19711	hypothetical protein	-	8e-6	At1g54890	late embryogenesis abundant protein-related / LEA protein-related	S.X.	H.G.	Please selecteFP Browser (expression)
0.77	94.9	Ptp.7170.1.S1_at	DN497999	hypothetical protein	-	1e+0	At1g69760	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.71	92.6	PtpAffx.205052.1.S1_at	pmrna10006	hypothetical protein	-	3e-8	At5g60520	late embryogenesis abundant protein-related / LEA protein-related	S.X.	H.G.	Please selecteFP Browser (expression)
0.35	59.7	PtpAffx.37311.1.A1_at	CV256718	hypothetical protein	-	3e-11	At5g44380	FAD-binding domain-containing protein	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
34.2	99.9	GSM328566	Populus x canescens root hypoxia_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
15.6	99.5	GSM328563	Populus x canescens root hypoxia_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
14.1	99.4	GSM328281	Populus x canescens root control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
13.0	99.4	GSM328483	Populus x canescens root control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.9	92.5	GSM328557	Populus x canescens root control_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.6	91.3	GSM328534	Populus x canescens root control_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM328559	Populus x canescens root control_rep_10	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.2	79.6	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.2	79.6	GSM328284	Populus x canescens root control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.1	78.0	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.88	0	2742	PtpAffx.219485.1.S1_s_at	pmrna35419	high affinity inorganic phosphate transporter	-	4e-12	At5g43370	APT1 (ARABIDOPSIS PHOSPHATE TRANSPORTER 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.74	0	1810	PtpAffx.215047.1.S1_s_at	pmrna28999	high affinity inorganic phosphate transporter /// high affinity inorganic phosphate transporter	-	9e-12	At5g43350	PHT1	C.G.	S.X.	Please selecteFP Browser (expression)
0.40	0	730	PtpAffx.219484.1.S1_s_at	pmrna35418	high affinity inorganic phosphate transporter /// high affinity inorganic phosphate transporter /// high affinity inorganic phosphate transporter	-	9e-4	At4g08895	inorganic phosphate transporter family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.56	3e-69	264	PtpAffx.201089.1.S1_at	pmrna2153	high affinity inorganic phosphate transporter	-	2e-29	At5g43360	PHT3 (PHOSPHATE TRANSPORTER 3)	C.G.	S.X.	Please selecteFP Browser (expression)
0.41	7e-39	163	PtpAffx.205756.1.S1_at	pmrna11366	high affinity inorganic phosphate transporter	-	1e-46	At2g38940	ATPT2 (ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.41	7e-39	163	PtpAffx.205756.1.S1_x_at	pmrna11366	high affinity inorganic phosphate transporter	-	1e-46	At2g38940	ATPT2 (ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.15	3e-32	141	PtpAffx.69535.2.A1_s_at	CV272173	high affinity inorganic phosphate transporter	-	2e-31	At2g38940	ATPT2 (ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.28	4e-31	137	PtpAffx.141538.1.S1_s_at	CA822385	high affinity inorganic phosphate transporter /// high affinity inorganic phosphate transporter /// high affinity inorganic phosphate transporter	-	3e-23	At2g38940	ATPT2 (ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.16	1e-25	119	PtpAffx.69535.1.A1_s_at	CV254601	high affinity inorganic phosphate transporter	-	8e-37	At2g38940	ATPT2 (ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 2)	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.32	2e-11	71	Arabidopsis thaliana	At5g43350	834353	PHT1	Encodes an inorganic phosphate transporter. Mutants display enhanced arsenic accumulation.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.21	4e-31	137	Glycine max	Gma.3262.1.S1_at	AI960141	-	-	4e-11	At3g54700	carbohydrate transmembrane transporter/ phosphate transmembrane transporter/ sugar:hydrogen symporter	C.G.	S.X.	Please select
0.05	2e+0	34	Hordeum vulgare	Contig7944_at	Contig7944	-	-	1e-1	At5g43370	APT1 (ARABIDOPSIS PHOSPHATE TRANSPORTER 1)	C.G.	S.X.	Please select
0.12	5e-19	97	Oryza sativa	Os08g0564000	AK119787.1	-	Phosphate transporter 6	1e-12	At5g43360	PHT3 (PHOSPHATE TRANSPORTER 3)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.11	2e-10	67	Triticum aestivum	Ta.2758.1.S1_at	AY293828.1	-	-	1e-6	At5g43360	PHT3 (PHOSPHATE TRANSPORTER 3)	C.G.	S.X.	Please select
0.08	8e-20	97	Vitis vinifera	1607681_at	CD802479	hypothetical protein LOC100257925	-	5e-28	At5g43370	APT1 (ARABIDOPSIS PHOSPHATE TRANSPORTER 1)	C.G.	S.X.	Please select
0.09	2e-11	69	Zea mays	Zm.7659.1.S1_at	AY639019.1	phosphate transport protein	-	5e-12	At5g43360	PHT3 (PHOSPHATE TRANSPORTER 3)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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