Gene omics information

Query gene ID PtpAffx.208691.1.S1_s_at
Gene name hypothetical protein
Organism Populus trichocarpa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.4471.9PtpAffx.208691.1.S1_s_atpmrna17244hypothetical protein-2e-81At1g60440ATPANK1 (PANTOTHENATE KINASE 1)S.X.H.G.
0.6086.0PtpAffx.33230.1.S1_a_atCV246411--2e-96At4g33430BAK1 (BRI1-ASSOCIATED RECEPTOR KINASE)S.X.H.G.
0.4471.9PtpAffx.210028.1.S1_atpmrna19762hypothetical protein-9e-33At5g54650Fh5 (FORMIN HOMOLOGY5)S.X.H.G.
0.4268.6PtpAffx.217108.1.S1_atpmrna32250hypothetical protein-8e-13At5g03330OTU-like cysteine protease family proteinS.X.H.G.
0.3559.7PtpAffx.36360.1.A1_atCV256586hypothetical protein-6e-31At2g33490hydroxyproline-rich glycoprotein family proteinS.X.H.G.
0.3255.2PtpAffx.37313.1.A1_atCV256677hypothetical protein-5e-47At3g26020serine/threonine protein phosphatase 2A (PP2A) regulatory subunit B', putativeS.X.H.G.
0.2238.3PtpAffx.42389.1.A1_a_atCV270177hypothetical protein-3e-16At2g02800APK2B (PROTEIN KINASE 2B)S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
11.999.2GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.995.1GSM328532Populus x canescens root hypoxia_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplar
3.393.7GSM328533Populus x canescens root hypoxia_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplar
3.393.7GSM328484Populus x canescens root hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplar
3.193.2GSM136936Poplar in 1 x hrp + 0.25 % sucrose no bacteriaGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.092.9GSM244436Mmd infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.892.1GSM327397Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_2GSE13990Populus balsamifera developmental tissue series
2.892.1GSM327400Populus balsamifera_20071015_Etiolated_seedling_6d_1GSE13990Populus balsamifera developmental tissue series
2.791.8GSM244440Mixed infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.791.8GSM244430non infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.9902734PtpAffx.208691.1.S1_atpmrna17244hypothetical protein-2e-81At1g60440ATPANK1 (PANTOTHENATE KINASE 1)C.G.S.X.
0.500648PtpAffx.20226.1.A1_atCV239955hypothetical protein-9e-18At1g60440ATPANK1 (PANTOTHENATE KINASE 1)C.G.S.X.
0.407e-153541PtpAffx.20226.2.S1_atBU824940hypothetical protein-1e+0At5g58710ROC7C.G.S.X.
0.184e-37157PtpAffx.202619.1.S1_atpmrna5238hypothetical protein-4e-14At1g60440ATPANK1 (PANTOTHENATE KINASE 1)C.G.S.X.
0.024e-344PtpAffx.103931.1.S1_atCV243526hypothetical protein-1e-3At5g53940yippee family proteinC.G.S.X.
0.024e-344Ptp.4275.2.S1_atCN550022hypothetical protein-3e-7At5g53940yippee family proteinC.G.S.X.
0.023e-138Ptp.3832.1.S1_atCX655760f-box family protein-4e-1At3g61650TUBG1 (GAMMA-TUBULIN)C.G.S.X.
0.011e+036PtpAffx.201220.1.S1_atpmrna2424hypothetical protein-2e+0At5g09630protein binding / zinc ion bindingC.G.S.X.
0.011e+036PtpAffx.201220.1.S1_s_atpmrna2424hypothetical protein-2e+0At5g09630protein binding / zinc ion bindingC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.442e-81303Arabidopsis thalianaAt1g60440842339ATPANK1 (PANTOTHENATE KINASE 1)The gene AT1G60440 encodes pantothenate kinase 1. Its molecular function was shown to phosphorylate pantothenate to form 4-phosphopantothenate.---C.G.S.X.
0.237e-42173Glycine maxGma.13172.1.A1_atBQ786367--3e-14At1g60440ATPANK1 (PANTOTHENATE KINASE 1)C.G.S.X.
0.031e-344Hordeum vulgareContig16649_atContig16649--6e-1At4g12540unknown proteinC.G.S.X.
0.191e-34149Oryza sativaOs09g0533100AK106530.1-Pantothenate kinase 4 (Fragment)2e-52At4g32180ATPANK2 (PANTOTHENATE KINASE 2)C.G.S.X.
0.115e-1169Triticum aestivumTaAffx.13369.1.S1_atBG905284--1e-21At4g32180ATPANK2 (PANTOTHENATE KINASE 2)C.G.S.X.
0.111e-30133Vitis vinifera1612482_atCA809174hypothetical protein LOC100258468-1e-9At1g60440ATPANK1 (PANTOTHENATE KINASE 1)C.G.S.X.
0.023e-136Zea maysZm.5280.1.S1_atCK368650--2e-8At1g76760ATY1 (ARABIDOPSIS THIOREDOXIN Y1)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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