Gene omics information

Query gene ID	PtpAffx.208691.1.S1_s_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.44	71.9	PtpAffx.208691.1.S1_s_at	pmrna17244	hypothetical protein	-	2e-81	At1g60440	ATPANK1 (PANTOTHENATE KINASE 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.60	86.0	PtpAffx.33230.1.S1_a_at	CV246411	-	-	2e-96	At4g33430	BAK1 (BRI1-ASSOCIATED RECEPTOR KINASE)	S.X.	H.G.	Please selecteFP Browser (expression)
0.44	71.9	PtpAffx.210028.1.S1_at	pmrna19762	hypothetical protein	-	9e-33	At5g54650	Fh5 (FORMIN HOMOLOGY5)	S.X.	H.G.	Please selecteFP Browser (expression)
0.42	68.6	PtpAffx.217108.1.S1_at	pmrna32250	hypothetical protein	-	8e-13	At5g03330	OTU-like cysteine protease family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.35	59.7	PtpAffx.36360.1.A1_at	CV256586	hypothetical protein	-	6e-31	At2g33490	hydroxyproline-rich glycoprotein family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.32	55.2	PtpAffx.37313.1.A1_at	CV256677	hypothetical protein	-	5e-47	At3g26020	serine/threonine protein phosphatase 2A (PP2A) regulatory subunit B', putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.22	38.3	PtpAffx.42389.1.A1_a_at	CV270177	hypothetical protein	-	3e-16	At2g02800	APK2B (PROTEIN KINASE 2B)	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
11.9	99.2	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.9	95.1	GSM328532	Populus x canescens root hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.3	93.7	GSM328533	Populus x canescens root hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.3	93.7	GSM328484	Populus x canescens root hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.1	93.2	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.0	92.9	GSM244436	Mmd infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.8	92.1	GSM327397	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_2	GSE13990	Populus balsamifera developmental tissue series
2.8	92.1	GSM327400	Populus balsamifera_20071015_Etiolated_seedling_6d_1	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM244440	Mixed infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.7	91.8	GSM244430	non infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.99	0	2734	PtpAffx.208691.1.S1_at	pmrna17244	hypothetical protein	-	2e-81	At1g60440	ATPANK1 (PANTOTHENATE KINASE 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.50	0	648	PtpAffx.20226.1.A1_at	CV239955	hypothetical protein	-	9e-18	At1g60440	ATPANK1 (PANTOTHENATE KINASE 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.40	7e-153	541	PtpAffx.20226.2.S1_at	BU824940	hypothetical protein	-	1e+0	At5g58710	ROC7	C.G.	S.X.	Please selecteFP Browser (expression)
0.18	4e-37	157	PtpAffx.202619.1.S1_at	pmrna5238	hypothetical protein	-	4e-14	At1g60440	ATPANK1 (PANTOTHENATE KINASE 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	4e-3	44	PtpAffx.103931.1.S1_at	CV243526	hypothetical protein	-	1e-3	At5g53940	yippee family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	4e-3	44	Ptp.4275.2.S1_at	CN550022	hypothetical protein	-	3e-7	At5g53940	yippee family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	3e-1	38	Ptp.3832.1.S1_at	CX655760	f-box family protein	-	4e-1	At3g61650	TUBG1 (GAMMA-TUBULIN)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	1e+0	36	PtpAffx.201220.1.S1_at	pmrna2424	hypothetical protein	-	2e+0	At5g09630	protein binding / zinc ion binding	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	1e+0	36	PtpAffx.201220.1.S1_s_at	pmrna2424	hypothetical protein	-	2e+0	At5g09630	protein binding / zinc ion binding	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.44	2e-81	303	Arabidopsis thaliana	At1g60440	842339	ATPANK1 (PANTOTHENATE KINASE 1)	The gene AT1G60440 encodes pantothenate kinase 1. Its molecular function was shown to phosphorylate pantothenate to form 4’-phosphopantothenate.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.23	7e-42	173	Glycine max	Gma.13172.1.A1_at	BQ786367	-	-	3e-14	At1g60440	ATPANK1 (PANTOTHENATE KINASE 1)	C.G.	S.X.	Please select
0.03	1e-3	44	Hordeum vulgare	Contig16649_at	Contig16649	-	-	6e-1	At4g12540	unknown protein	C.G.	S.X.	Please select
0.19	1e-34	149	Oryza sativa	Os09g0533100	AK106530.1	-	Pantothenate kinase 4 (Fragment)	2e-52	At4g32180	ATPANK2 (PANTOTHENATE KINASE 2)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.11	5e-11	69	Triticum aestivum	TaAffx.13369.1.S1_at	BG905284	-	-	1e-21	At4g32180	ATPANK2 (PANTOTHENATE KINASE 2)	C.G.	S.X.	Please select
0.11	1e-30	133	Vitis vinifera	1612482_at	CA809174	hypothetical protein LOC100258468	-	1e-9	At1g60440	ATPANK1 (PANTOTHENATE KINASE 1)	C.G.	S.X.	Please select
0.02	3e-1	36	Zea mays	Zm.5280.1.S1_at	CK368650	-	-	2e-8	At1g76760	ATY1 (ARABIDOPSIS THIOREDOXIN Y1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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