CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.208589.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.43 69.7 PtpAffx.208589.1.S1_at pmrna17046 hypothetical protein - 3e-1 At5g65640 bHLH093 (beta HLH protein 93) S.X. H.G.
0.43 69.7 PtpAffx.107147.1.S1_at CX174000 hypothetical protein - 3e-2 At3g52240 unknown protein S.X. H.G.
0.35 59.7 PtpAffx.208001.1.S1_at pmrna15880 hypothetical protein - 1e-11 At1g25540 PFT1 (PHYTOCHROME AND FLOWERING TIME 1) S.X. H.G.
0.22 38.3 PtpAffx.1634.3.A1_at BP933609 hypothetical protein - 3e-1 At3g26680 SNM1 (SENSITIVE TO NITROGEN MUSTARD 1) S.X. H.G.
0.17 29.1 PtpAffx.3736.1.S1_at CV250453 hypothetical protein - 2e-4 At5g63140 ATPAP29 (ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 29) S.X. H.G.
0.15 25.3 PtpAffx.214496.1.S1_at pmrna28186 hypothetical protein - 8e-45 At5g35160 - S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
7.5 98.3 GSM244437 Mmd infected tissue, biological rep2 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
6.8 98.0 GSM244441 Mixed infected tissue, biological rep3 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
5.7 97.3 GSM244435 Mlp infected tissue, biological rep3 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
5.1 96.8 GSM136936 Poplar in 1 x hrp + 0.25 % sucrose no bacteria GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
5.1 96.8 GSM244436 Mmd infected tissue, biological rep1 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
4.2 95.6 GSM244440 Mixed infected tissue, biological rep2 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
4.1 95.5 GSM244432 non infected tissue, biological rep3 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
4.0 95.3 GSM244434 Mlp infected tissue, biological rep2 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.6 94.5 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.6 91.3 GSM244431 non infected tissue, biological rep2 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.47 6e-111 400 PtpAffx.129180.1.S1_at CK107309 hypothetical protein - 1e+0 At3g48590 NF-YC1 (NUCLEAR FACTOR Y, SUBUNIT C1) C.G. S.X.
0.58 1e-28 127 PtpAffx.208217.1.S1_at pmrna16353 hypothetical protein - 1e-1 At3g08880 unknown protein C.G. S.X.
0.09 6e-28 125 PtpAffx.6127.2.A1_a_at CK097509 hypothetical protein - 7e-6 At1g04530 binding C.G. S.X.
0.02 4e-1 36 PtpAffx.910.1.A1_s_at CV263598 hypothetical protein - 2e+0 At4g10880 unknown protein C.G. S.X.
0.03 4e-1 36 PtpAffx.50450.1.A1_at CV244466 - - 7e+0 At4g15400 transferase family protein C.G. S.X.
0.02 4e-1 36 PtpAffx.218976.1.S1_at pmrna34748 hypothetical protein - 2e+0 At1g69295 PDCB4 (PLASMODESMATA CALLOSE-BINDING PROTEIN 4) C.G. S.X.
0.02 4e-1 36 PtpAffx.213713.1.S1_at pmrna26762 hypothetical protein - 3e-9 At3g51650 unknown protein C.G. S.X.
0.02 4e-1 36 PtpAffx.206347.1.S1_at pmrna12600 hypothetical protein - 2e-4 At3g51650 unknown protein C.G. S.X.
0.01 4e-1 36 PtpAffx.205443.1.S1_at pmrna10763 hypothetical protein - 3e-56 At4g24580 REN1 (ROP1 ENHANCER 1) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 3e-1 36 Arabidopsis thaliana At5g65640 836690 bHLH093 (beta HLH protein 93) F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMFO - - - C.G. S.X.
0.04 4e-1 36 Glycine max HgAffx.23332.1.S1_at BF014517 - - 3e+0 At3g57110 unknown protein C.G. S.X.
0.03 2e+0 32 Hordeum vulgare HT08G03u_x_at HT08G03u - - 1e+0 At5g46710 zinc-binding family protein C.G. S.X.
0.03 6e-1 36 Oryza sativa Os02g0101300 AK105715.1 - Conserved hypothetical protein 9e-2 At5g40500 unknown protein C.G. S.X.
0.04 5e+0 32 Triticum aestivum TaAffx.83817.1.S1_at CA650443 - - 4e+0 At2g07521 unknown protein C.G. S.X.
0.04 5e+0 30 Vitis vinifera 1617209_at CB980244 - - 7e-1 At1g71330 ATNAP5 C.G. S.X.
0.03 5e-1 34 Zea mays Zm.8744.1.A1_at BM351252 - - 1e+0 At5g67490 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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