Gene omics information

Query gene ID	PtpAffx.208448.1.S1_at
Gene name	cation proton exchanger
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.47	74.6	PtpAffx.208448.1.S1_at	pmrna16781	cation proton exchanger	-	1e-12	At3g17630	ATCHX19 (CATION/H+ EXCHANGER 19)	S.X.	H.G.	Please selecteFP Browser (expression)
0.67	91.1	PtpAffx.213114.1.S1_at	pmrna25663	hypothetical protein	-	2e-1	At1g12150	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.61	87.0	PtpAffx.215792.1.S1_s_at	pmrna30183	hypothetical protein	-	4e-18	At2g15880	leucine-rich repeat family protein / extensin family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.56	83.9	PtpAffx.221320.1.S1_at	pmrna38124	hypothetical protein	-	6e-1	At4g25950	VATG3 (vacuolar ATP synthase G3)	S.X.	H.G.	Please selecteFP Browser (expression)
0.40	67.0	PtpAffx.216147.1.S1_s_at	pmrna30756	hypothetical protein	-	1e-12	At4g31230	protein kinase family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.24	41.8	PtpAffx.221348.1.S1_at	pmrna38189	hypothetical protein	-	9e-25	At4g10010	protein kinase family protein	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
33.3	99.9	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
26.4	99.9	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
14.2	99.5	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
13.6	99.4	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
6.2	97.6	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.2	79.6	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
0.0	33.6	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
0.0	33.6	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
0.0	33.6	GSM372042	Clone1979_LPI5_N-_8w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
0.0	33.6	GSM244431	non infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.96	0	3784	PtpAffx.208441.1.S1_at	pmrna16773	cation proton exchanger	-	3e-13	At3g17630	ATCHX19 (CATION/H+ EXCHANGER 19)	C.G.	S.X.	Please selecteFP Browser (expression)
0.96	0	3784	PtpAffx.208441.1.S1_s_at	pmrna16773	cation proton exchanger /// cation proton exchanger	-	3e-13	At3g17630	ATCHX19 (CATION/H+ EXCHANGER 19)	C.G.	S.X.	Please selecteFP Browser (expression)
0.13	3e-85	317	PtpAffx.208446.1.S1_at	pmrna16778	cation proton exchanger	-	2e+0	At5g39870	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.13	3e-85	317	PtpAffx.208446.1.S1_s_at	pmrna16778	cation proton exchanger /// cation proton exchanger /// cation proton exchanger	-	2e+0	At5g39870	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.11	5e-19	97	PtpAffx.203278.1.S1_at	pmrna6498	cation proton exchanger	-	3e-10	At5g41610	ATCHX18	C.G.	S.X.	Please selecteFP Browser (expression)
0.05	5e-13	77	PtpAffx.200392.1.S1_at	pmrna784	cation proton exchanger	-	3e-23	At5g41610	ATCHX18	C.G.	S.X.	Please selecteFP Browser (expression)
0.06	2e-9	65	PtpAffx.206136.1.S1_at	pmrna12170	cation proton exchanger	-	1e-9	At3g53720	ATCHX20 (CATION/H+ EXCHANGER 20)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	2e-3	46	PtpAffx.209246.1.S1_at	pmrna18280	cation proton exchanger	-	2e-5	At2g13620	ATCHX15	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	6e-3	44	PtpAffx.207057.1.S1_at	pmrna13986	cation proton exchanger	-	1e-22	At2g13620	ATCHX15	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.17	1e-12	75	Arabidopsis thaliana	At3g17630	821030	ATCHX19 (CATION/H+ EXCHANGER 19)	member of Putative Na+/H+ antiporter family	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	2e+0	36	Glycine max	Gma.11384.1.A1_at	AW307241	-	-	3e+0	At5g42930	triacylglycerol lipase	C.G.	S.X.	Please select
0.01	2e+0	34	Hordeum vulgare	HV12L03u_at	HV12L03u	-	-	5e+0	At5g38420	ribulose bisphosphate carboxylase small chain 2B / RuBisCO small subunit 2B (RBCS-2B) (ATS2B)	C.G.	S.X.	Please select
0.06	6e-10	67	Oryza sativa	Os05g0276100	AK069092.1	-	Na+/H+ exchangeing protein-like	2e-5	At4g23700	ATCHX17 (CATION/H+ EXCHANGER 17)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.01	1e+0	36	Triticum aestivum	TaAffx.124239.1.S1_at	BE213663	-	-	2e+0	At3g54200	-	C.G.	S.X.	Please select
0.01	1e-3	44	Vitis vinifera	1611614_at	CB978170	hypothetical protein LOC100253481	-	4e-2	At3g17630	ATCHX19 (CATION/H+ EXCHANGER 19)	C.G.	S.X.	Please select
0.01	5e-1	36	Zea mays	Zm.18403.1.A1_at	BM072852	hypothetical protein LOC100274307	-	5e-3	At5g38120	4-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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