CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.208282.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 99.2 PtpAffx.208282.1.S1_at pmrna16473 hypothetical protein - 4e-1 At1g15100 RHA2A S.X. H.G.
0.07 11.6 Ptp.4056.1.S1_at DN484701 hypothetical protein - 4e-30 At2g26470 unknown protein S.X. H.G.
0.05 8.3 Ptp.6903.1.S1_at DN484668 hypothetical protein - 7e+0 Atmg00750 - S.X. H.G.
0.02 3.6 PtpAffx.162631.1.S1_at CF233360 hypothetical protein - 3e-21 At3g07370 CHIP (CARBOXYL TERMINUS OF HSC70-INTERACTING PROTEIN) S.X. H.G.
0.02 3.6 PtpAffx.23392.1.S1_at CV276934 hypothetical protein - 5e-18 At2g29580 zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein S.X. H.G.
0.01 2.2 PtpAffx.213395.1.S1_at pmrna26207 hypothetical protein - 1e-24 At3g05680 EMB2016 (embryo defective 2016) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
16.7 99.6 GSM328565 Populus x canescens root hypoxia_rep_07 GSE13109 Effect of hypoxia on gene expression in Grey poplar
13.3 99.4 GSM328567 Populus x canescens root hypoxia_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
8.5 98.6 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
7.4 98.2 GSM328564 Populus x canescens root hypoxia_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.1 96.8 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.8 92.1 GSM328560 Populus x canescens root control_rep_11 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.2 89.3 GSM327413 Populus balsamifera_1006_differentiating_xylem_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.2 89.3 GSM328559 Populus x canescens root control_rep_10 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.0 88.0 GSM327403 Populus balsamifera_20071015_Etiolated_seedling_6d_3 GSE13990 Populus balsamifera developmental tissue series
1.7 85.5 GSM328483 Populus x canescens root control_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.37 0 712 PtpAffx.208661.1.S1_at pmrna17182 hypothetical protein - 1e+0 At1g13030 sphere organelles protein-related C.G. S.X.
0.01 5e-1 36 PtpAffx.32362.1.S1_at CV242633 acyl:coa ligase acetate-coa synthetase-like protein - 2e-2 At1g68270 AMP-dependent synthetase and ligase family protein C.G. S.X.
0.01 5e-1 36 PtpAffx.224850.1.S1_at pmrna43731 hypothetical protein - 3e-1 At3g29763 - C.G. S.X.
0.01 5e-1 36 PtpAffx.211620.1.S1_at pmrna22771 hypothetical protein - 8e-27 At2g46520 cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative C.G. S.X.
0.02 2e+0 34 PtpAffx.222354.1.S1_s_at pmrna39703 hypothetical protein - 2e+0 At3g53600 zinc finger (C2H2 type) family protein C.G. S.X.
0.02 2e+0 34 PtpAffx.222191.1.S1_s_at pmrna39445 hypothetical protein - 3e-1 At2g21220 auxin-responsive protein, putative C.G. S.X.
0.02 2e+0 34 PtpAffx.213263.1.S1_x_at pmrna25945 hypothetical protein - 7e-1 At2g21220 auxin-responsive protein, putative C.G. S.X.
0.02 2e+0 34 PtpAffx.210301.1.S1_at pmrna20265 GRAS family transcription factor LATERAL - 6e-4 At1g55580 LAS (Lateral Suppressor) C.G. S.X.
0.02 2e+0 34 PtpAffx.210301.1.S1_x_at pmrna20265 GRAS family transcription factor LATERAL - 6e-4 At1g55580 LAS (Lateral Suppressor) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 4e-1 36 Arabidopsis thaliana At1g15100 838073 RHA2A Encodes a putative RING-H2 finger protein RHA2a. - - - C.G. S.X.
0.04 1e-1 38 Glycine max GmaAffx.81337.1.S1_at BF070440 - - 3e+0 At5g56520 unknown protein C.G. S.X.
0.03 7e-1 34 Hordeum vulgare Contig4463_s_at Contig4463 - - 6e-1 At4g21540 SPHK1 (SPHINGOSINE KINASE 1) C.G. S.X.
0.02 7e-1 36 Oryza sativa Os.6730.1.S1_at - - - 0 C.G. S.X.
0.03 2e+0 34 Triticum aestivum TaAffx.122624.2.S1_at BG909421 - - 1e-21 At3g54190 - C.G. S.X.
0.05 1e-7 56 Vitis vinifera 1609539_at CF414995 hypothetical protein LOC100256103 - 5e-3 At1g13030 sphere organelles protein-related C.G. S.X.
0.03 2e+0 32 Zea mays Zm.8680.1.A1_at BM075162 hypothetical protein LOC100277231 - 1e-3 At1g70760 CRR23 ((chlororespiratory reduction 23) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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