CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.208241.1.S1_s_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.93 99.5 PtpAffx.208241.1.S1_s_at pmrna16404 hypothetical protein - 1e-20 At5g43230 unknown protein S.X. H.G.
0.36 61.6 Ptp.4743.1.S1_at CV228986 hypothetical protein - 7e-9 At1g54610 protein kinase family protein S.X. H.G.
0.29 50.5 Ptp.566.1.A1_at AJ778851 hypothetical protein - 8e-28 At5g18900 oxidoreductase, 2OG-Fe(II) oxygenase family protein S.X. H.G.
0.27 47.1 PtpAffx.20146.1.S1_at BU824578 hypothetical protein - 7e-1 At3g49780 ATPSK4 (PHYTOSULFOKINE 4 PRECURSOR) S.X. H.G.
0.18 30.8 PtpAffx.74706.1.A1_s_at CV243425 hypothetical protein - 7e-30 At3g17210 HS1 (HEAT STABLE PROTEIN 1) S.X. H.G.
0.08 12.9 PtpAffx.5895.1.S1_at CV230287 calcium dependent protein kinase 22 /// calcium dependent protein kinase 3 - 8e-24 At4g23650 CDPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6) S.X. H.G.
0.05 8.3 PtpAffx.147608.1.A1_at BP936625 hypothetical protein - 8e-34 At2g01940 nucleic acid binding / transcription factor/ zinc ion binding S.X. H.G.
0.04 6.9 Ptp.649.1.A1_s_at CV266858 hypothetical protein - 9e-18 At2g37110 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
11.1 99.1 GSM327413 Populus balsamifera_1006_differentiating_xylem_midday_3 GSE13990 Populus balsamifera developmental tissue series
8.6 98.6 GSM327409 Populus balsamifera_1006_root_midday_3 GSE13990 Populus balsamifera developmental tissue series
3.7 94.7 GSM328559 Populus x canescens root control_rep_10 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.7 94.7 GSM328558 Populus x canescens root control_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.3 93.7 GSM328484 Populus x canescens root hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.2 93.5 GSM327408 Populus balsamifera_1006_root_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.2 93.5 GSM328284 Populus x canescens root control_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.8 92.1 GSM328277 Populus x canescens root control_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.7 91.8 GSM328532 Populus x canescens root hypoxia_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.5 90.9 GSM328533 Populus x canescens root hypoxia_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.55 0 892 PtpAffx.129494.1.S1_at CK093302 hypothetical protein - 1e-22 At5g43230 unknown protein C.G. S.X.
0.30 5e-83 309 PtpAffx.15631.1.A1_at BI131060 hypothetical protein - 2e-1 At1g50800 unknown protein C.G. S.X.
0.12 2e-23 111 PtpAffx.95502.1.A1_at CV243613 hypothetical protein - 2e-2 At5g06930 - C.G. S.X.
0.06 1e-15 85 Ptp.7642.1.S1_at DN497883 hypothetical protein - 2e+0 At4g32930 unknown protein C.G. S.X.
0.08 3e-7 57 PtpAffx.16901.1.S1_at CX660057 hypothetical protein - 1e-11 At3g57780 - C.G. S.X.
0.02 7e-2 40 PtpAffx.76446.1.A1_at CV230181 hypothetical protein - 5e+0 At5g28295 unknown protein C.G. S.X.
0.01 1e+0 36 PtpAffx.82206.1.A1_at CV256123 hypothetical protein - 9e-3 At5g53150 heat shock protein binding / unfolded protein binding C.G. S.X.
0.01 1e+0 36 PtpAffx.217211.1.S1_at pmrna32385 hypothetical protein - 9e-134 At1g10950 endomembrane protein 70, putative C.G. S.X.
0.01 1e+0 36 PtpAffx.217211.1.S1_s_at pmrna32385 hypothetical protein - 9e-134 At1g10950 endomembrane protein 70, putative C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.17 1e-20 101 Arabidopsis thaliana At5g43230 834341 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOB - - - C.G. S.X.
0.28 8e-51 202 Glycine max GmaAffx.71462.1.S1_at BM308753 - - 5e-6 At5g43230 unknown protein C.G. S.X.
0.08 1e-10 67 Hordeum vulgare Contig18434_at Contig18434 - - 2e+0 At3g04720 PR4 (PATHOGENESIS-RELATED 4) C.G. S.X.
0.12 3e-8 61 Oryza sativa Os.7004.1.S1_at - - - 0 C.G. S.X.
0.02 2e-1 38 Triticum aestivum TaAffx.97891.1.S1_at BQ802237 - - 3e+0 At1g48745 unknown protein C.G. S.X.
0.34 6e-48 190 Vitis vinifera 1606524_at CB979170 hypothetical protein LOC100266440 - 2e-19 At3g01810 - C.G. S.X.
0.09 2e-5 50 Zea mays Zm.2972.1.A1_at BM073882 - - 4e-3 At3g01810 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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