CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.208227.1.S1_at

Gene name ammonium transporter

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.75 94.1 PtpAffx.208227.1.S1_at pmrna16371 ammonium transporter - 2e-20 At1g64780 ATAMT1 S.X. H.G.
0.14 23.5 PtpAffx.143501.1.S1_at BU883274 hypothetical protein - 1e+0 At2g31380 STH S.X. H.G.
0.03 5.2 PtpAffx.5765.1.A1_at CV244528 hypothetical protein - 2e-13 At1g55140 RNA binding / ribonuclease III S.X. H.G.
0.02 3.6 PtpAffx.26424.2.S1_a_at CK097746 hypothetical protein - 2e-4 At1g22690 gibberellin-responsive protein, putative S.X. H.G.
0.02 3.6 PtpAffx.903.2.S1_a_at DN487155 hypothetical protein - 8e-6 At1g04290 thioesterase family protein S.X. H.G.
0.02 3.6 PtpAffx.152922.1.A1_at CV278271 - - 1e+0 At3g26870 self-incompatibility protein-related S.X. H.G.
0.01 2.2 PtpAffx.62182.1.S1_a_at CV261082 hypothetical protein - 3e-2 At1g18170 immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
8.1 98.5 GSM372099 Clone3200_LPI5_N+_8w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
7.3 98.2 GSM372100 Clone3200_LPI5_N+_8w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
5.8 97.4 GSM362888 Clone1979_LPI5_N+_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
5.6 97.2 GSM327281 Populus balsamifera_20071015_Seedling_continuous_light_6d_1 GSE13990 Populus balsamifera developmental tissue series
5.5 97.1 GSM362885 Clone1979_LPI2_N-_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
5.4 97.0 GSM334224 Populus balsamifera_1006_mature_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
4.2 95.6 GSM362883 Clone1979_LPI2_N+_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.6 94.5 GSM372094 Clone3200_LPI5_N+_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.3 93.7 GSM372093 Clone3200_LPI5_N+_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.1 93.2 GSM372091 Clone3200_LPI2_N-_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.67 0 1511 PtpAffx.3665.1.S1_a_at BP934564 ammonium transporter - 2e-11 At4g28700 AMT1 C.G. S.X.
0.36 6e-74 280 PtpAffx.202713.1.S1_at pmrna5432 ammonium transporter - 6e-17 At3g24290 AMT1 C.G. S.X.
0.37 6e-34 147 PtpAffx.202712.1.S1_at pmrna5431 ammonium transporter - 4e-21 At4g28700 AMT1 C.G. S.X.
0.28 3e-29 131 Ptp.5712.1.S1_at CK113355 ammonium transporter - 3e-28 At1g64780 ATAMT1 C.G. S.X.
0.13 5e-16 87 PtpAffx.156186.1.S1_at BP922063 ammonium transporter - 9e-11 At1g64780 ATAMT1 C.G. S.X.
0.03 4e-7 57 PtpAffx.201888.1.S1_at pmrna3770 - - 9e-6 At5g09320 VPS9B C.G. S.X.
0.03 6e-6 54 PtpAffx.88938.1.A1_at CV245325 - - 2e+0 At5g24170 - C.G. S.X.
0.07 6e-6 54 PtpAffx.200743.1.S1_at pmrna1428 - - 2e-4 At3g24290 AMT1 C.G. S.X.
0.03 2e-3 46 PtpAffx.374.6.A1_at CV253352 - - 4e+0 At5g59340 WOX2 (WUSCHEL RELATED HOMEOBOX 2) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.27 2e-20 101 Arabidopsis thaliana At1g64780 842786 ATAMT1 encodes an ammonium transporter protein believed to act as a high affinity transporter. It is expressed in the root, primarily in endodermal and cortical cells, and contributes to ammonium uptake in the root. - - - C.G. S.X.
0.04 1e-4 50 Glycine max Gma.9265.1.S1_at BU551320 - - 6e-6 At4g28700 AMT1 C.G. S.X.
0.02 2e+0 34 Hordeum vulgare Contig20708_at Contig20708 - - 1e-4 At4g13510 AMT1 C.G. S.X.
0.10 1e-23 113 Oryza sativa Os02g0620500 9630.m03934 - High affinity ammonium transporter 3e-19 At1g64780 ATAMT1 C.G. S.X.
0.07 4e-31 137 Triticum aestivum Ta.12823.1.S1_at CA638403 Ammonium transporter Amt1;1 - 2e-20 At4g13510 AMT1 C.G. S.X.
0.04 2e-5 50 Vitis vinifera 1610744_at CF415597 hypothetical protein LOC100258016 - 1e+0 At2g47170 ARF1A1C C.G. S.X.
0.01 2e+0 34 Zea mays Zm.12528.1.A1_at AI734581 hypothetical protein LOC100274560 - 3e+0 At5g50740 metal ion binding C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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