Gene omics information

Query gene ID	PtpAffx.208173.1.S1_x_at
Gene name	autoinhibited calcium ATPase
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.2	PtpAffx.208173.1.S1_x_at	pmrna16258	autoinhibited calcium ATPase	-	7e-55	At3g22910	calcium-transporting ATPase, plasma membrane-type, putative / Ca(2+)-ATPase, putative (ACA13)	S.X.	H.G.	Please selecteFP Browser (expression)
0.73	93.6	PtpAffx.208173.1.S1_at	pmrna16258	autoinhibited calcium ATPase	-	7e-55	At3g22910	calcium-transporting ATPase, plasma membrane-type, putative / Ca(2+)-ATPase, putative (ACA13)	S.X.	H.G.	Please selecteFP Browser (expression)
0.67	91.1	PtpAffx.224180.1.S1_at	pmrna42478	hypothetical protein	-	1e-4	At5g13200	GRAM domain-containing protein / ABA-responsive protein-related	S.X.	H.G.	Please selecteFP Browser (expression)
0.38	63.7	PtpAffx.214387.1.S1_at	pmrna27998	hypothetical protein	-	7e-1	At4g16510	YbaK/prolyl-tRNA synthetase-related	S.X.	H.G.	Please selecteFP Browser (expression)
0.31	53.7	PtpAffx.208983.1.S1_s_at	pmrna17803	hypothetical protein	-	3e-2	At1g68765	IDA (INFLORESCENCE DEFICIENT IN ABSCISSION)	S.X.	H.G.	Please selecteFP Browser (expression)
0.25	43.6	PtpAffx.161922.1.A1_s_at	CK094074	autoinhibited calcium ATPase /// autoinhibited calcium ATPase	-	3e+0	At4g17453	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
18.8	99.7	GSM328483	Populus x canescens root control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
16.5	99.6	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
10.1	99.0	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
8.0	98.4	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
7.4	98.2	GSM328565	Populus x canescens root hypoxia_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.9	95.1	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.8	94.9	GSM328566	Populus x canescens root hypoxia_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.4	94.0	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	5769	PtpAffx.208173.1.S1_at	pmrna16258	autoinhibited calcium ATPase	-	7e-55	At3g22910	calcium-transporting ATPase, plasma membrane-type, putative / Ca(2+)-ATPase, putative (ACA13)	C.G.	S.X.	Please selecteFP Browser (expression)
0.90	0	3687	PtpAffx.208747.1.S1_x_at	pmrna17342	autoinhibited calcium ATPase	-	3e-45	At3g22910	calcium-transporting ATPase, plasma membrane-type, putative / Ca(2+)-ATPase, putative (ACA13)	C.G.	S.X.	Please selecteFP Browser (expression)
0.90	0	3687	PtpAffx.208747.1.S1_at	pmrna17342	autoinhibited calcium ATPase	-	3e-45	At3g22910	calcium-transporting ATPase, plasma membrane-type, putative / Ca(2+)-ATPase, putative (ACA13)	C.G.	S.X.	Please selecteFP Browser (expression)
0.16	8e-105	383	PtpAffx.161922.1.A1_s_at	CK094074	autoinhibited calcium ATPase /// autoinhibited calcium ATPase	-	3e+0	At4g17453	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.26	1e-84	315	PtpAffx.201699.1.S1_at	pmrna3388	autoinhibited calcium ATPase	-	2e-89	At3g63380	calcium-transporting ATPase, plasma membrane-type, putative / Ca(2+)-ATPase, putative (ACA12)	C.G.	S.X.	Please selecteFP Browser (expression)
0.26	1e-84	315	PtpAffx.201699.1.S1_x_at	pmrna3388	autoinhibited calcium ATPase	-	2e-89	At3g63380	calcium-transporting ATPase, plasma membrane-type, putative / Ca(2+)-ATPase, putative (ACA12)	C.G.	S.X.	Please selecteFP Browser (expression)
0.35	5e-78	293	PtpAffx.205722.1.S1_at	pmrna11294	autoinhibited calcium ATPase	-	4e-81	At3g63380	calcium-transporting ATPase, plasma membrane-type, putative / Ca(2+)-ATPase, putative (ACA12)	C.G.	S.X.	Please selecteFP Browser (expression)
0.18	3e-33	145	Ptp.7148.1.S1_at	DN488127	-	-	1e-7	At3g63380	calcium-transporting ATPase, plasma membrane-type, putative / Ca(2+)-ATPase, putative (ACA12)	C.G.	S.X.	Please selecteFP Browser (expression)
0.07	6e-13	77	PtpAffx.86362.1.S1_s_at	CV274254	autoinhibited calcium ATPase /// autoinhibited calcium ATPase	-	8e-86	At3g21180	ACA9 (AUTOINHIBITED CA(2+)-ATPASE 9)	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.28	7e-55	216	Arabidopsis thaliana	At3g22910	821863	calcium-transporting ATPase, plasma membrane-type, putative / Ca(2+)-ATPase, putative (ACA13)	F:calmodulin binding, calcium-transporting ATPase activity;P:cation transport, calcium ion transport, metabolic process, ATP biosynthetic process;C:membrane;BMOFPAV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	6e-7	57	Glycine max	Gma.3527.1.S1_at	AW733755	-	-	7e-69	At3g21180	ACA9 (AUTOINHIBITED CA(2+)-ATPASE 9)	C.G.	S.X.	Please select
0.08	5e-8	59	Hordeum vulgare	Contig25293_at	Contig25293	-	-	5e-52	At3g21180	ACA9 (AUTOINHIBITED CA(2+)-ATPASE 9)	C.G.	S.X.	Please select
0.06	3e-6	56	Oryza sativa	Os04g0605500	AK120057.1	-	Calcium-transporting ATPase 8, plasmamembrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform 8)	3e-30	At3g21180	ACA9 (AUTOINHIBITED CA(2+)-ATPASE 9)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	7e-9	63	Triticum aestivum	Ta.9178.1.S1_at	CD452861	-	-	7e-17	At4g29900	ACA10 (AUTOINHIBITED CA(2+)-ATPASE 10)	C.G.	S.X.	Please select
0.29	3e-125	448	Vitis vinifera	1616662_at	CF404703	hypothetical protein LOC100254645	-	2e-34	At3g63380	calcium-transporting ATPase, plasma membrane-type, putative / Ca(2+)-ATPase, putative (ACA12)	C.G.	S.X.	Please select
0.06	1e-5	52	Zea mays	Zm.17277.1.S1_at	CF273093	-	-	1e-45	At5g57110	ACA8 (AUTOINHIBITED CA2+ -ATPASE, ISOFORM 8)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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