Gene omics information

Query gene ID	PtpAffx.208057.1.S1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.53	80.5	PtpAffx.208057.1.S1_at	pmrna15992	hypothetical protein	-	5e-2	At1g15000	scpl50 (serine carboxypeptidase-like 50)	S.X.	H.G.	Please selecteFP Browser (expression)
0.44	71.9	PtpAffx.80513.1.S1_at	CV277326	hypothetical protein	-	5e-8	At3g51550	FER (FERONIA)	S.X.	H.G.	Please selecteFP Browser (expression)
0.33	57.5	PtpAffx.212195.1.S1_at	pmrna23908	hypothetical protein	-	1e-33	At5g16810	ATP binding / protein kinase	S.X.	H.G.	Please selecteFP Browser (expression)
0.17	29.1	PtpAffx.222709.1.S1_at	pmrna40297	hypothetical protein	-	2e-78	At3g04870	ZDS (ZETA-CAROTENE DESATURASE)	S.X.	H.G.	Please selecteFP Browser (expression)
0.13	21.6	PtpAffx.57191.1.A1_at	CV276610	hypothetical protein	-	8e+0	At5g25020	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.05	8.3	Ptp.4653.1.S1_at	CK116855	-	-	2e-21	At4g04880	adenosine/AMP deaminase family protein	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.7	97.9	GSM327358	Populus balsamifera_20071015_Seedling_continuous_light_6d_2	GSE13990	Populus balsamifera developmental tissue series
5.5	97.1	GSM372045	Clone1979_LPI5_N+_8w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.7	96.3	GSM372100	Clone3200_LPI5_N+_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.0	95.3	GSM372094	Clone3200_LPI5_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.4	94.0	GSM372097	Clone3200_LPI5_N-_8w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.2	93.5	GSM372098	Clone3200_LPI5_N-_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.1	93.2	GSM327281	Populus balsamifera_20071015_Seedling_continuous_light_6d_1	GSE13990	Populus balsamifera developmental tissue series
2.8	92.1	GSM372099	Clone3200_LPI5_N+_8w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.7	91.8	GSM372093	Clone3200_LPI5_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.6	91.3	GSM244441	Mixed infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.67	0	1598	PtpAffx.163092.1.S1_s_at	BU886689	hypothetical protein	-	2e+0	At2g32100	OFP16 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 16)	C.G.	S.X.	Please selecteFP Browser (expression)
0.63	7e-141	502	PtpAffx.222663.1.S1_at	pmrna40215	hypothetical protein	-	4e-2	At3g07880	Rho GDP-dissociation inhibitor family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.20	9e-54	212	PtpAffx.208885.1.S1_at	pmrna17626	hypothetical protein	-	8e+0	At4g20420	tapetum-specific protein-related	C.G.	S.X.	Please selecteFP Browser (expression)
0.16	2e-39	165	PtpAffx.149077.1.A1_at	CK091652	-	-	2e+0	At1g34350	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	8e-2	40	PtpAffx.220945.1.S1_s_at	pmrna37442	cc-nbs-lrr resistance protein /// cc-nbs-lrr resistance protein /// cc-nbs resistance protein /// cc-nbs-lrr resistance protein	-	2e-1	At4g10290	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	8e-2	40	PtpAffx.1364.3.A1_at	CV261479	hypothetical protein	-	1e-107	At4g28390	AAC3 (ADP/ATP CARRIER 3)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	8e-2	40	PtpAffx.1364.1.A1_a_at	CN518397	hypothetical protein	-	8e-20	At4g28390	AAC3 (ADP/ATP CARRIER 3)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	3e-1	38	PtpAffx.225872.1.S1_at	pmrna45514	cc-nbs-lrr resistance protein	-	4e-1	At5g12235	CLE22 (CLAVATA3/ESR-RELATED 22)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	3e-1	38	PtpAffx.225531.1.S1_s_at	pmrna44939	cc-nbs-lrr resistance protein	-	6e-1	At4g02400	-	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	5e-2	40	Arabidopsis thaliana	At1g15000	838065	scpl50 (serine carboxypeptidase-like 50)	F:serine-type carboxypeptidase activity;P:proteolysis;C:vacuole;PMFOB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.11	4e-19	97	Glycine max	GmaAffx.75545.1.S1_at	BI425772	-	-	4e+0	Atcg00580	-	C.G.	S.X.	Please select
0.02	2e+0	34	Hordeum vulgare	Contig10147_s_at	Contig10147	-	-	1e+0	At4g09950	avirulence-responsive family protein / avirulence induced gene (AIG1) family protein	C.G.	S.X.	Please select
0.02	3e-2	42	Oryza sativa	Os07g0479300	D17587.1	-	Serine carboxypeptidase-like (EC 3.4.16.-)(Fragment)	4e-6	At3g10410	scpl49 (serine carboxypeptidase-like 49)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	1e-2	42	Triticum aestivum	TaAffx.112925.1.S1_at	CA619734	-	-	2e-1	At1g13220	LINC2 (LITTLE NUCLEI2)	C.G.	S.X.	Please select
0.02	3e-1	36	Vitis vinifera	1612314_at	CB342413	hypothetical protein LOC100241649	-	3e-20	At4g30810	scpl29 (serine carboxypeptidase-like 29)	C.G.	S.X.	Please select
0.02	2e+0	34	Zea mays	Zm.5557.1.A1_at	CD573414	hypothetical protein LOC100279552	-	1e+0	At5g24890	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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