CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.207997.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.63 88.1 PtpAffx.207997.1.S1_at pmrna15871 hypothetical protein - 3e-1 At2g43280 far-red impaired responsive family protein / FAR1 family protein S.X. H.G.
0.50 78.6 PtpAffx.51365.1.S1_at CV268792 - - 3e-14 At5g49810 MMT S.X. H.G.
0.25 43.6 PtpAffx.207998.1.S1_at pmrna15872 hypothetical protein - 5e-22 At1g25570 leucine-rich repeat protein-related S.X. H.G.
0.24 41.8 PtpAffx.201572.1.S1_s_at pmrna3087 hypothetical protein - 5e+0 Atcg01090 - S.X. H.G.
0.07 11.6 PtpAffx.157774.1.S1_at BU834744 hypothetical protein - 2e-2 At2g18730 diacylglycerol kinase, putative S.X. H.G.
0.07 11.6 PtpAffx.152677.1.S1_at CX172956 - - 6e-12 At5g53100 oxidoreductase, putative S.X. H.G.
0.04 6.9 PtpAffx.205265.1.S1_at pmrna10442 hypothetical protein - 2e-1 At1g16270 protein kinase family protein S.X. H.G.
0.03 5.2 PtpAffx.8018.3.S1_s_at BU898296 hypothetical protein - 1e+0 At5g55000 FIP2 S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
5.0 96.6 GSM244437 Mmd infected tissue, biological rep2 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.9 95.1 GSM362888 Clone1979_LPI5_N+_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.6 94.5 GSM328560 Populus x canescens root control_rep_11 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.0 92.9 GSM328534 Populus x canescens root control_rep_07 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.0 92.9 GSM328557 Populus x canescens root control_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.0 92.9 GSM244432 non infected tissue, biological rep3 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.6 91.3 GSM362884 Clone1979_LPI2_N+_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.1 88.6 GSM328483 Populus x canescens root control_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.9 87.2 GSM328561 Populus x canescens root control_rep_12 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.9 87.2 GSM328285 Populus x canescens root control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.31 1e-72 274 PtpAffx.31307.1.A1_s_at CV240581 hypothetical protein - 8e+0 Atcg00800 - C.G. S.X.
0.31 1e-72 274 PtpAffx.31307.1.A1_at CV240581 hypothetical protein - 8e+0 Atcg00800 - C.G. S.X.
0.05 3e-2 40 PtpAffx.223607.1.S1_at pmrna41675 hypothetical protein - 2e-1 At3g06420 ATG8H (autophagy 8h) C.G. S.X.
0.03 2e+0 34 PtpAffx.64825.1.S1_at BU820225 hypothetical protein - 3e-23 At3g55580 regulator of chromosome condensation (RCC1) family protein C.G. S.X.
0.01 2e+0 34 PtpAffx.213749.1.S1_at pmrna26843 hypothetical protein - 5e-4 At2g48110 REF4 (REDUCED EPIDERMAL FLUORESCENCE 4) C.G. S.X.
0.01 7e+0 32 PtpAffx.222910.1.S1_at pmrna40634 hypothetical protein - 8e-1 At5g01910 unknown protein C.G. S.X.
0.01 7e+0 32 PtpAffx.215386.1.S1_at pmrna29543 hypothetical protein - 2e-8 At2g40540 KT2 (POTASSIUM TRANSPORTER 2) C.G. S.X.
0.01 7e+0 32 PtpAffx.211066.1.S1_at pmrna21730 hypothetical protein - 2e-61 At5g19820 emb2734 (embryo defective 2734) C.G. S.X.
0.01 7e+0 32 PtpAffx.210603.1.S1_at pmrna20801 hypothetical protein - 4e-1 At3g05660 AtRLP33 (Receptor Like Protein 33) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 3e-1 36 Arabidopsis thaliana At2g43280 818930 far-red impaired responsive family protein / FAR1 family protein F:unknown;P:response to red or far red light;C:cellular_component unknown;P - - - C.G. S.X.
0.03 2e+0 34 Glycine max GmaAffx.38792.1.S1_at BI968162 - - 2e-10 At5g11110 ATSPS2F (SUCROSE PHOSPHATE SYNTHASE 2F) C.G. S.X.
0.04 1e+1 30 Hordeum vulgare HS05H08u_at HS05H08u - - 6e-1 At2g01340 unknown protein C.G. S.X.
0.04 1e+1 32 Oryza sativa OsAffx.7613.1.S1_at - - - 0 C.G. S.X.
0.03 1e+0 34 Triticum aestivum TaAffx.113289.1.S1_at CA616582 - - 4e+0 At4g32342 unknown protein C.G. S.X.
0.03 4e-1 34 Vitis vinifera 1614294_at CB339204 hypothetical protein LOC100266288 - 2e-15 At2g34160 nucleic acid binding C.G. S.X.
0.03 9e+0 30 Zea mays Zm.8859.1.A1_at BM340085 - - 5e+0 At2g37240 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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