Gene omics information

Query gene ID	PtpAffx.207643.1.S1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.60	86.0	PtpAffx.207643.1.S1_at	pmrna15162	hypothetical protein	-	3e-1	At3g57390	AGL18	S.X.	H.G.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.9819.1.S1_at	DN497878	-	-	9e-1	At5g35737	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.46	73.7	PtpAffx.212939.1.S1_at	pmrna25319	hypothetical protein	-	2e-8	At5g07380	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.40	67.0	PtpAffx.202991.1.S1_at	pmrna5919	hypothetical protein	-	6e-1	At3g04510	LSH2 (LIGHT SENSITIVE HYPOCOTYLS 2)	S.X.	H.G.	Please selecteFP Browser (expression)
0.31	53.7	PtpAffx.116755.1.A1_at	CK089718	-	-	6e-1	At1g80160	lactoylglutathione lyase family protein / glyoxalase I family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.19	32.7	PtpAffx.225864.1.S1_at	pmrna45498	hypothetical protein	-	1e+0	At4g16500	cysteine protease inhibitor family protein / cystatin family protein	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
10.7	99.1	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
9.4	98.8	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
7.4	98.2	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
5.2	96.8	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.0	95.3	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.3	93.7	GSM334226	Populus balsamifera_1006_mature_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.6	91.3	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.6	91.3	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.70	2e-62	240	PtpAffx.204753.1.S1_at	pmrna9354	hypothetical protein	-	3e-4	At5g60440	AGL62 (Agamous-like 62)	C.G.	S.X.	Please selecteFP Browser (expression)
0.16	2e-12	73	PtpAffx.209393.1.S1_at	pmrna18604	hypothetical protein	-	5e+0	At5g44170	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	5e-4	46	PtpAffx.213800.1.S1_at	pmrna26936	hypothetical protein	-	2e-5	At5g60440	AGL62 (Agamous-like 62)	C.G.	S.X.	Please selecteFP Browser (expression)
0.07	5e-4	46	PtpAffx.207193.1.S1_at	pmrna14268	hypothetical protein	-	3e-4	At5g51860	MADS-box protein (AGL72)	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	7e-3	42	PtpAffx.56981.3.S1_at	CV242364	MIKC mads-box transcription factor SOC1	-	4e-23	At4g11880	AGL14 (agamous-like 14)	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	7e-3	42	PtpAffx.207022.1.S1_at	pmrna13913	hypothetical protein	-	2e-5	At5g60440	AGL62 (Agamous-like 62)	C.G.	S.X.	Please selecteFP Browser (expression)
0.05	7e-3	42	PtpAffx.204095.1.S1_at	pmrna8082	hypothetical protein	-	7e-2	At3g11745	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	3e-2	40	PtpAffx.219271.1.S1_at	pmrna35140	hypothetical protein	-	2e-2	At1g71692	AGL12 (AGAMOUS-LIKE 12)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	1e-1	38	PtpAffx.56981.1.S1_at	BU873015	MIKC mads-box transcription factor SOC1	-	5e-26	At4g11880	AGL14 (agamous-like 14)	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	3e-1	36	Arabidopsis thaliana	At3g57390	824906	AGL18	encodes a MADS-box containing protein likely to be a transcription factor that is expressed in endosperm and developing gametophytes. The protein sequence is most similar to that of AGL15, which is expressed in developing embryos.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e+0	34	Glycine max	GmaAffx.89980.1.S1_at	CF805705	-	-	1e-31	At1g15310	ATHSRP54A (ARABIDOPSIS THALIANA SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT)	C.G.	S.X.	Please select
0.02	3e+0	32	Hordeum vulgare	Contig20396_at	Contig20396	-	-	6e+0	Atmg00240	-	C.G.	S.X.	Please select
0.04	4e-2	40	Oryza sativa	Os04g0234500	9632.m01499	-	-	8e-1	At1g27450	APT1 (ADENINE PHOSPHORIBOSYL TRANSFERASE 1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	1e+0	34	Triticum aestivum	TaAffx.108622.1.S1_at	CA686137	-	-	1e+0	At1g52618	unknown protein	C.G.	S.X.	Please select
0.03	2e+0	32	Vitis vinifera	1614306_at	CB974634	hypothetical protein LOC100265168	-	3e-1	At2g01070	-	C.G.	S.X.	Please select
0.03	2e+0	32	Zea mays	Zm.8230.1.A1_at	CF025942	hypothetical protein LOC100191834	-	3e+0	At5g15790	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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