Gene omics information

Query gene ID	PtpAffx.207593.1.S1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	91.1	PtpAffx.207593.1.S1_at	pmrna15069	hypothetical protein	-	2e-2	At4g13850	GR-RBP2 (GLYCINE-RICH RNA-BINDING PROTEIN 2)	S.X.	H.G.	Please selecteFP Browser (expression)
0.83	97.0	PtpAffx.207593.1.S1_x_at	pmrna15069	hypothetical protein	-	2e-2	At4g13850	GR-RBP2 (GLYCINE-RICH RNA-BINDING PROTEIN 2)	S.X.	H.G.	Please selecteFP Browser (expression)
0.83	97.0	PtpAffx.19128.1.S1_at	AJ779721	hypothetical protein	-	3e+0	At5g48420	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.80	96.0	PtpAffx.207591.1.S1_x_at	pmrna15065	hypothetical protein	-	6e-2	At4g13850	GR-RBP2 (GLYCINE-RICH RNA-BINDING PROTEIN 2)	S.X.	H.G.	Please selecteFP Browser (expression)
0.21	36.5	PtpAffx.215318.1.S1_s_at	pmrna29438	hypothetical protein	-	1e+0	At5g61660	glycine-rich protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.15	25.3	PtpAffx.156807.1.S1_at	CX168731	hypothetical protein	-	1e+0	At3g12955	auxin-responsive protein-related	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
38.3	100.0	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
30.0	99.9	GSM328565	Populus x canescens root hypoxia_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
10.5	99.0	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.9	95.1	GSM328563	Populus x canescens root hypoxia_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM328560	Populus x canescens root control_rep_11	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.3	81.0	GSM328483	Populus x canescens root control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.2	79.6	GSM328562	Populus x canescens root hypoxia_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.0	76.2	GSM328534	Populus x canescens root control_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.0	76.2	GSM328532	Populus x canescens root hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
0.9	74.2	GSM328557	Populus x canescens root control_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.73	0	642	PtpAffx.207593.1.S1_x_at	pmrna15069	hypothetical protein	-	2e-2	At4g13850	GR-RBP2 (GLYCINE-RICH RNA-BINDING PROTEIN 2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.59	4e-81	301	PtpAffx.207591.1.S1_x_at	pmrna15065	hypothetical protein	-	6e-2	At4g13850	GR-RBP2 (GLYCINE-RICH RNA-BINDING PROTEIN 2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.32	9e-30	131	PtpAffx.19128.1.S1_at	AJ779721	hypothetical protein	-	3e+0	At5g48420	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.20	1e-7	57	PtpAffx.207592.1.S1_at	pmrna15066	hypothetical protein	-	3e+0	At5g14370	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	4e-7	56	PtpAffx.210460.1.S1_at	pmrna20538	hypothetical protein	-	1e-4	At4g01050	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	3e-5	50	PtpAffx.95698.1.A1_s_at	CV235344	hypothetical protein	-	2e-8	At1g06190	ATP binding / ATPase, coupled to transmembrane movement of ions, phosphorylative mechanism	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	3e-5	50	PtpAffx.206193.1.S1_s_at	pmrna12300	hypothetical protein	-	2e+0	At2g24060	translation initiation factor 3 (IF-3) family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	3e-5	50	PtpAffx.206193.1.S1_at	pmrna12300	hypothetical protein	-	2e+0	At2g24060	translation initiation factor 3 (IF-3) family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.06	4e-4	46	PtpAffx.207398.1.S1_at	pmrna14680	hypothetical protein	-	2e-2	At3g45160	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.09	2e-2	40	Arabidopsis thaliana	At4g13850	827019	GR-RBP2 (GLYCINE-RICH RNA-BINDING PROTEIN 2)	Encodes a glycine-rich RNA-binding protein. Gene expression is induced by cold.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	3e-2	40	Glycine max	Gma.1069.1.S1_at	BI944189	-	-	3e-14	At2g32600	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please select
0.04	2e-3	42	Hordeum vulgare	Contig14330_at	Contig14330	-	-	6e-3	At3g29034	unknown protein	C.G.	S.X.	Please select
0.09	6e-4	46	Oryza sativa	Os05g0227600	AY224438.1	-	Conserved hypothetical protein	3e-6	At2g24060	translation initiation factor 3 (IF-3) family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.12	5e-3	42	Triticum aestivum	Ta.29551.1.A1_at	CA719367	-	-	4e-3	At5g27520	PNC2 (PEROXISOMAL ADENINE NUCLEOTIDE CARRIER 2)	C.G.	S.X.	Please select
0.06	4e-4	44	Vitis vinifera	1607541_at	CF208308	hypothetical protein LOC100257913	-	4e-1	At3g13960	AtGRF5 (GROWTH-REGULATING FACTOR 5)	C.G.	S.X.	Please select
0.06	5e-4	44	Zea mays	ZmAffx.873.1.A1_at	AI770779	-	-	5e-2	At4g30460	glycine-rich protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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