Gene omics information

Query gene ID	PtpAffx.207501.1.S1_at
Gene name	glycosyltransferase
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.95	99.7	PtpAffx.207501.1.S1_at	pmrna14897	glycosyltransferase	-	1e-39	At3g25140	QUA1 (QUASIMODO 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.40	67.0	Ptp.4976.1.A1_at	CV267703	hypothetical protein	-	7e-3	At1g31440	SH3 domain-containing protein 1 (SH3P1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.34	58.3	Ptp.4536.1.S1_at	CV231736	hypothetical protein	-	1e-1	At5g56420	F-box family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.31	53.7	PtpAffx.5850.3.A1_s_at	CV281939	hypothetical protein	-	1e+0	At1g56060	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.31	53.7	PtpAffx.75792.1.A1_at	CV257571	hypothetical protein	-	6e-22	At5g48970	mitochondrial substrate carrier family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.30	52.0	PtpAffx.201600.1.S1_at	pmrna3147	-	-	4e-40	At4g24190	SHD (SHEPHERD)	S.X.	H.G.	Please selecteFP Browser (expression)
0.30	52.0	PtpAffx.154543.1.A1_a_at	CV268890	-	-	5e-24	At4g34490	ATCAP1 (ARABIDOPSIS THALIANA CYCLASE ASSOCIATED PROTEIN 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.29	50.5	PtpAffx.207662.1.S1_at	pmrna15207	hypothetical protein	-	6e-4	At3g45740	hydrolase family protein / HAD-superfamily protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.28	50.5	PtpAffx.202007.1.S1_at	pmrna4000	amino acid transporter	-	2e-1	At1g52040	MBP1 (MYROSINASE-BINDING PROTEIN 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.27	47.1	PtpAffx.213868.1.S1_at	pmrna27051	hypothetical protein	-	3e-46	At3g27440	uracil phosphoribosyltransferase, putative / UMP pyrophosphorylase, putative / UPRTase, putative	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
18.1	99.7	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
13.2	99.4	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
8.2	98.5	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
6.2	97.6	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.7	94.7	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.0	92.9	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.8	92.1	GSM362886	Clone1979_LPI2_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.4	90.4	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM328062	Populus x canescens leaf control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.26	1e-30	135	Ptp.401.1.S1_at	CV240226	glycosyltransferase, CAZy family GT8	-	7e-130	At3g25140	QUA1 (QUASIMODO 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.14	1e-21	105	PtpAffx.209478.1.S1_at	pmrna18795	hypothetical protein	-	7e+0	At5g50740	metal ion binding	C.G.	S.X.	Please selecteFP Browser (expression)
0.23	2e-17	91	PtpAffx.1975.1.S1_s_at	CX658367	glycosyltransferase, CAZy family GT8	-	2e-59	At3g25140	QUA1 (QUASIMODO 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.05	7e-5	50	PtpAffx.61842.1.A1_at	CK091185	-	-	7e-46	At3g02350	GAUT9 (Galacturonosyltransferase 9)	C.G.	S.X.	Please selecteFP Browser (expression)
0.06	7e-5	50	PtpAffx.102976.1.S1_at	AI164544	glycosyltransferase, CAZy family GT8	-	9e-89	At3g01040	GAUT13 (Galacturonosyltransferase 13)	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	4e-3	44	PtpAffx.98487.1.S1_s_at	CV231822	glycosyltransferase, CAZy family GT8	-	2e-12	At5g47780	GAUT4 (Galacturonosyltransferase 4)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	3e-1	38	PtpAffx.9633.1.S1_at	BU867806	hypothetical protein	-	3e-2	At1g30800	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	3e-1	38	PtpAffx.207269.1.S1_at	pmrna14422	glutamate-gated kainate-type ion channel receptor subunit GluR5	-	7e-2	At2g27470	NF-YB11 (NUCLEAR FACTOR Y, SUBUNIT B11)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	1e+0	36	PtpAffx.222427.1.S1_at	pmrna39822	hypothetical protein	-	0	At5g22770	alpha-ADR (alpha-adaptin)	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.28	1e-39	165	Arabidopsis thaliana	At3g25140	822105	QUA1 (QUASIMODO 1)	Quasimodo1, encodes a glycosyltransferase, involved in homogalacturonan biosynthesis; mutant shows cell adhesion defect and lower wall uronic acid content.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.29	7e-39	163	Glycine max	Gma.2113.1.S1_at	BM519739	-	-	3e-84	At3g25140	QUA1 (QUASIMODO 1)	C.G.	S.X.	Please select
0.13	1e-10	67	Hordeum vulgare	Contig11018_at	Contig11018	-	-	1e-48	At3g25140	QUA1 (QUASIMODO 1)	C.G.	S.X.	Please select
0.10	4e-13	77	Oryza sativa	Os02g0498700	AK069572.1	-	Glycosyltransferase QUASIMODO1 (EC 2.4.1.-)	1e-77	At3g25140	QUA1 (QUASIMODO 1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.12	8e-1	36	Triticum aestivum	Ta.4430.1.A1_at	BJ266252	-	-	1e-3	At2g20810	GAUT10 (GALACTURONOSYLTRANSFERASE 10)	C.G.	S.X.	Please select
0.31	2e-44	178	Vitis vinifera	1614612_at	CF513589	similar to GAUT8/QUA1 (GALACTURONOSYLTRANSFERASE 8, QUASIMODO1); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups /// hypothetical protein LOC100258818	-	4e-145	At3g25140	QUA1 (QUASIMODO 1)	C.G.	S.X.	Please select
0.04	3e-4	46	Zea mays	Zm.13469.1.S1_at	AY109041.1	hypothetical protein LOC100191781	-	2e-30	At3g61130	GAUT1 (GALACTURONOSYLTRANSFERASE 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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