Gene omics information

Query gene ID	PtpAffx.207438.1.S1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.56	83.9	PtpAffx.207438.1.S1_at	pmrna14771	hypothetical protein	-	3e-1	At5g42146	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.78	95.1	PtpAffx.145511.1.S1_at	BP927294	hypothetical protein	-	1e+0	At2g15490	UGT73B4 (UDP-GLYCOSYLTRANSFERASE 73B4)	S.X.	H.G.	Please selecteFP Browser (expression)
0.70	91.7	PtpAffx.44290.1.A1_at	CV238019	hypothetical protein	-	3e-1	At2g29340	short-chain dehydrogenase/reductase (SDR) family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.60	86.0	PtpAffx.32930.1.A1_at	CK095139	hypothetical protein	-	2e-1	At1g14185	glucose-methanol-choline (GMC) oxidoreductase family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.58	84.2	PtpAffx.211742.1.S1_at	pmrna23011	hypothetical protein	-	2e-4	At4g16120	COBL7 (COBRA-LIKE 7)	S.X.	H.G.	Please selecteFP Browser (expression)
0.58	84.2	PtpAffx.134772.1.S1_s_at	DN483641	ABC transporter family, retinal flippase subfamily	-	1e-3	At5g61690	ATATH15	S.X.	H.G.	Please selecteFP Browser (expression)
0.47	74.6	PtpAffx.130922.1.S1_s_at	AJ773860	-	-	5e-6	At1g66950	PDR11 (PLEIOTROPIC DRUG RESISTANCE 11)	S.X.	H.G.	Please selecteFP Browser (expression)
0.44	71.9	PtpAffx.204500.1.S1_s_at	pmrna8828	lysine/histidine transporter /// lysine/histidine transporter	-	2e-7	At1g47670	amino acid transporter family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.40	67.0	PtpAffx.218018.1.S1_s_at	pmrna33518	flavonoid o-methyltransferase related /// flavonoid o-methyltransferase related	-	6e-4	At3g16780	60S ribosomal protein L19 (RPL19B)	S.X.	H.G.	Please selecteFP Browser (expression)
0.39	64.6	PtpAffx.200436.1.S1_at	pmrna877	hypothetical protein	-	3e-2	At3g51970	AtSAT1 (Arabidopsis thaliana sterol O-acyltransferase 1)	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
30.0	99.9	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
13.4	99.4	GSM328483	Populus x canescens root control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
5.6	97.2	GSM328292	Populus x canescens root control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.3	95.8	GSM328566	Populus x canescens root hypoxia_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.9	95.1	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.5	94.3	GSM328563	Populus x canescens root hypoxia_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.4	94.0	GSM328484	Populus x canescens root hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.8	92.1	GSM328281	Populus x canescens root control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.8	92.1	GSM328277	Populus x canescens root control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.8	92.1	GSM328559	Populus x canescens root control_rep_10	GSE13109	Effect of hypoxia on gene expression in Grey poplar

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.67	1e-72	274	PtpAffx.211408.1.S1_at	pmrna22358	hypothetical protein	-	3e+0	At2g42210	mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	3e-2	40	PtpAffx.43827.1.A1_at	CV257024	-	-	2e-24	At2g36480	zinc finger (C2H2-type) family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.05	3e-2	40	PtpAffx.219816.1.S1_at	pmrna35937	hypothetical protein	-	7e-1	At4g04885	PCFS4 (PCF11P-SIMILAR PROTEIN 4)	C.G.	S.X.	Please selecteFP Browser (expression)
0.05	3e-2	40	PtpAffx.219816.1.S1_s_at	pmrna35937	hypothetical protein	-	7e-1	At4g04885	PCFS4 (PCF11P-SIMILAR PROTEIN 4)	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	3e-2	40	PtpAffx.210460.1.S1_at	pmrna20538	hypothetical protein	-	1e-4	At4g01050	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	3e-2	40	PtpAffx.207591.1.S1_x_at	pmrna15065	hypothetical protein	-	6e-2	At4g13850	GR-RBP2 (GLYCINE-RICH RNA-BINDING PROTEIN 2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	3e-2	40	PtpAffx.207593.1.S1_at	pmrna15069	hypothetical protein	-	2e-2	At4g13850	GR-RBP2 (GLYCINE-RICH RNA-BINDING PROTEIN 2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	3e-2	40	PtpAffx.207593.1.S1_x_at	pmrna15069	hypothetical protein	-	2e-2	At4g13850	GR-RBP2 (GLYCINE-RICH RNA-BINDING PROTEIN 2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	3e-2	40	PtpAffx.204032.1.S1_at	pmrna7954	hypothetical protein	-	4e-9	At2g32230	pentatricopeptide (PPR) repeat-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	3e-1	36	Arabidopsis thaliana	At5g42146	3771399	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.09	1e-10	67	Glycine max	Gma.3751.1.S1_at	AW350303	-	-	6e+0	At5g25840	unknown protein	C.G.	S.X.	Please select
0.04	2e+0	32	Hordeum vulgare	S0000700012G10F2_at	S0000700012G10F2	-	-	5e-1	At5g61030	GR-RBP3 (glycine-rich RNA-binding protein 3)	C.G.	S.X.	Please select
0.03	4e-2	40	Oryza sativa	Os04g0131650	9632.m00330	-	-	4e-1	At1g70990	proline-rich family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	2e-2	40	Triticum aestivum	TaAffx.28947.1.S1_at	CA653822	-	-	4e-3	At2g24060	translation initiation factor 3 (IF-3) family protein	C.G.	S.X.	Please select
0.03	1e+0	32	Vitis vinifera	1609452_at	BQ794280	hypothetical protein LOC100249768	-	3e-1	At4g31460	ribosomal protein L28 family protein	C.G.	S.X.	Please select
0.04	3e-2	38	Zea mays	Zm.8846.1.A1_at	BM337343	-	-	4e+0	At3g29250	copper ion binding / oxidoreductase	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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