CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.207424.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 91.1 PtpAffx.207424.1.S1_at pmrna14733 hypothetical protein - 3e-23 At4g38090 unknown protein S.X. H.G.
0.67 91.1 PtpAffx.120026.2.S1_at CX170140 hypothetical protein - 1e+0 At5g02740 nucleotide binding S.X. H.G.
0.67 91.1 PtpAffx.157898.1.S1_at DN494939 hypothetical protein - 8e-21 At5g11580 UVB-resistance protein-related / regulator of chromosome condensation (RCC1) family protein S.X. H.G.
0.35 59.7 PtpAffx.207962.1.S1_at pmrna15809 hypothetical protein - 1e-13 At1g26180 unknown protein S.X. H.G.
0.29 50.5 PtpAffx.200384.1.S1_at pmrna767 hypothetical protein - 9e-26 At4g11110 SPA2 (SPA1-RELATED 2) S.X. H.G.
0.16 26.9 Ptp.5807.1.A1_at CV243181 hypothetical protein - 6e-18 At3g02770 dimethylmenaquinone methyltransferase family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
7.4 98.2 GSM372042 Clone1979_LPI5_N-_8w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
6.4 97.7 GSM372097 Clone3200_LPI5_N-_8w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
5.9 97.4 GSM372043 Clone1979_LPI5_N-_8w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.2 95.6 GSM372098 Clone3200_LPI5_N-_8w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.1 93.2 GSM372100 Clone3200_LPI5_N+_8w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.0 92.9 GSM372045 Clone1979_LPI5_N+_8w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.0 92.9 GSM372096 Clone3200_LPI5_N-_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.5 90.9 GSM372095 Clone3200_LPI5_N-_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.4 90.4 GSM372044 Clone1979_LPI5_N+_8w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.1 88.6 GSM372093 Clone3200_LPI5_N+_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 1e-1 38 PtpAffx.221324.1.S1_at pmrna38130 hypothetical protein - 6e-22 At1g35460 basic helix-loop-helix (bHLH) family protein C.G. S.X.
0.02 1e-1 38 PtpAffx.215493.1.S1_at pmrna29720 hypothetical protein - 2e-25 At4g04930 DES-1-LIKE C.G. S.X.
0.02 1e-1 38 PtpAffx.215493.1.S1_s_at pmrna29720 hypothetical protein - 2e-25 At4g04930 DES-1-LIKE C.G. S.X.
0.01 5e-1 36 PtpAffx.224330.1.S1_at pmrna42779 tir-cc-nbs-lrr resistance protein - 3e-2 At3g14470 disease resistance protein (NBS-LRR class), putative C.G. S.X.
0.01 5e-1 36 PtpAffx.209700.1.S1_at pmrna19147 hypothetical protein - 2e-5 At1g11070 - C.G. S.X.
0.02 5e-1 36 Ptp.1681.1.A1_at DN487332 hypothetical protein - 4e-8 At5g63220 unknown protein C.G. S.X.
0.02 2e+0 34 PtpAffx.211946.1.S1_s_at pmrna23454 hypothetical protein - 2e+0 At4g32240 unknown protein C.G. S.X.
0.01 2e+0 34 PtpAffx.209981.1.S1_s_at pmrna19693 hypothetical protein - 3e-14 At4g27430 CIP7 (COP1-INTERACTING PROTEIN 7) C.G. S.X.
0.03 2e+0 34 PtpAffx.209441.1.S1_at pmrna18703 hypothetical protein - 2e-3 At3g10580 myb family transcription factor C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.41 3e-23 109 Arabidopsis thaliana At4g38090 829965 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOAMFP - - - C.G. S.X.
0.03 2e+0 34 Glycine max PsAffx.psMA010xD09f_at PsAffx.psMA010xD09f - - 1e+0 At1g07985 Expressed protein C.G. S.X.
0.04 6e-1 34 Hordeum vulgare HVSMEa0011G17r2_x_at HVSMEa0011G17r2 - - 4e+0 At1g26665 - C.G. S.X.
0.16 3e-12 73 Oryza sativa Os08g0478100 AK063259.1 - Protein of unknown function UPF0029 family protein 2e-4 At4g38090 unknown protein C.G. S.X.
0.03 1e+0 34 Triticum aestivum Ta.4703.1.S1_at BJ270351 - - 2e+0 At1g13450 DNA binding protein GT-1 C.G. S.X.
0.19 1e-13 75 Vitis vinifera 1619572_at CB002043 hypothetical protein LOC100262901 - 1e-3 At4g38090 unknown protein C.G. S.X.
0.03 2e+0 32 Zea mays ZmAffx.958.1.S1_at AI833529 - - 2e-1 At3g49570 LSU3 (RESPONSE TO LOW SULFUR 3) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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