CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.207398.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.47 74.6 PtpAffx.207398.1.S1_at pmrna14680 hypothetical protein - 2e-2 At3g45160 unknown protein S.X. H.G.
0.38 63.7 Ptp.1794.2.A1_at CK092692 - - 3e+0 At3g27890 NQR (NADPH:QUINONE OXIDOREDUCTASE) S.X. H.G.
0.22 38.3 PtpAffx.215627.1.S1_at pmrna29919 hypothetical protein - 2e+0 At3g63050 unknown protein S.X. H.G.
0.20 34.6 PtpAffx.78180.1.S1_at CB239355 - - 2e+0 At1g62850 - S.X. H.G.
0.20 34.6 PtpAffx.47728.1.S1_at BI125402 - - 2e-1 At5g37930 seven in absentia (SINA) family protein S.X. H.G.
0.18 30.8 PtpAffx.200892.1.S1_x_at pmrna1753 - - 9e-22 Atcg01050 - S.X. H.G.
0.11 18.1 PtpAffx.37301.1.A1_at CV257142 hypothetical protein - 2e-21 At5g10940 transducin family protein / WD-40 repeat family protein S.X. H.G.
0.10 16.3 PtpAffx.206323.1.S1_at pmrna12555 hypothetical protein - 1e-3 At5g67060 HEC1 (HECATE 1) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
10.1 99.0 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
9.9 98.9 GSM362887 Clone1979_LPI5_N+_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
6.3 97.7 GSM362883 Clone1979_LPI2_N+_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
6.0 97.5 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
5.5 97.1 GSM327659 Populus balsamifera_Male_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
5.4 97.0 GSM372092 Clone3200_LPI2_N-_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
5.0 96.6 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
3.2 93.5 GSM372096 Clone3200_LPI5_N-_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.0 92.9 GSM362889 Clone1979_LPI5_N-_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.5 90.9 GSM327411 Populus balsamifera_1006_differentiating_xylem_midday_1 GSE13990 Populus balsamifera developmental tissue series
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 3e-2 40 PtpAffx.204361.1.S1_at pmrna8571 hypothetical protein - 2e-4 At2g29410 MTPB1 (METAL TOLERANCE PROTEIN B1) C.G. S.X.
0.02 1e-1 38 PtpAffx.18875.1.A1_at CV253276 hypothetical protein - 6e+0 At5g20120 unknown protein C.G. S.X.
0.03 1e-1 38 PtpAffx.157379.1.S1_at CN517658 hypothetical protein - 1e-31 At4g09460 ATMYB6 C.G. S.X.
0.03 5e-1 36 PtpAffx.653.14.A1_s_at CX173034 hypothetical protein - 3e-4 At1g70470 unknown protein C.G. S.X.
0.03 5e-1 36 PtpAffx.50640.1.A1_at CV238485 - - 1e+1 At4g16140 proline-rich family protein C.G. S.X.
0.03 5e-1 36 PtpAffx.222215.1.S1_at pmrna39483 hypothetical protein - 8e-5 At1g13920 remorin family protein C.G. S.X.
0.02 5e-1 36 PtpAffx.220056.1.S1_x_at pmrna36332 hypothetical protein - 4e-2 At5g46730 glycine-rich protein C.G. S.X.
0.03 5e-1 36 PtpAffx.220060.1.S1_s_at pmrna36341 hypothetical protein - 1e-17 At1g32360 zinc finger (CCCH-type) family protein C.G. S.X.
0.01 5e-1 36 PtpAffx.214469.1.S1_at pmrna28142 hypothetical protein - 9e-20 At5g58160 actin binding C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 2e-2 40 Arabidopsis thaliana At3g45160 823652 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P - - - C.G. S.X.
0.05 8e-3 42 Glycine max GmaAffx.17492.1.S1_at BE822327 - - 2e-2 At1g19960 - C.G. S.X.
0.03 2e-1 36 Hordeum vulgare HVSMEn0015C19r2_at HVSMEn0015C19r2 - - 7e-2 At4g13850 GR-RBP2 (GLYCINE-RICH RNA-BINDING PROTEIN 2) C.G. S.X.
0.04 2e-1 38 Oryza sativa OsAffx.32091.1.S1_at - - - 0 C.G. S.X.
0.03 2e+0 34 Triticum aestivum TaAffx.83500.1.S1_at CA656894 - - 2e-1 At2g40510 40S ribosomal protein S26 (RPS26A) C.G. S.X.
0.03 1e-1 36 Vitis vinifera 1620792_at CF605390 hypothetical protein LOC100242276 - 3e-1 At4g13850 GR-RBP2 (GLYCINE-RICH RNA-BINDING PROTEIN 2) C.G. S.X.
0.04 6e-1 34 Zea mays Zm.5827.1.A1_at BQ539573 meiosis 5 - 1e-1 At4g13850 GR-RBP2 (GLYCINE-RICH RNA-BINDING PROTEIN 2) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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