CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.207361.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 99.2 PtpAffx.207361.1.S1_at pmrna14602 hypothetical protein - 2e-19 At1g75220 integral membrane protein, putative S.X. H.G.
0.80 96.0 PtpAffx.213688.1.S1_s_at pmrna26723 hypothetical protein - 4e-1 At5g38090 unknown protein S.X. H.G.
0.60 86.0 PtpAffx.7814.3.A1_a_at CA933166 hypothetical protein - 2e-27 At5g47180 vesicle-associated membrane family protein / VAMP family protein S.X. H.G.
0.53 80.5 PtpAffx.201899.1.S1_at pmrna3786 hypothetical protein - 1e-12 At4g08550 electron carrier/ protein disulfide oxidoreductase S.X. H.G.
0.31 53.7 Ptp.2138.1.S1_s_at CX183011 hypothetical protein - 7e-12 At1g27350 - S.X. H.G.
0.29 50.5 PtpAffx.108289.1.A1_s_at CV246215 hypothetical protein - 1e-16 At3g12620 protein phosphatase 2C family protein / PP2C family protein S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
20.5 99.8 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
19.3 99.7 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
13.8 99.4 GSM327659 Populus balsamifera_Male_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
11.8 99.2 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
11.3 99.2 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
9.2 98.8 GSM327658 Populus balsamifera_Female_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
0.5 63.3 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
0.4 59.5 GSM136936 Poplar in 1 x hrp + 0.25 % sucrose no bacteria GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
0.3 55.0 GSM328483 Populus x canescens root control_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
0.3 55.0 GSM328558 Populus x canescens root control_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.18 5e-18 93 PtpAffx.221991.1.S1_at pmrna39160 hypothetical protein - 5e+0 At3g02600 LPP3 (LIPID PHOSPHATE PHOSPHATASE 3) C.G. S.X.
0.02 7e-2 40 PtpAffx.51919.1.S1_at CK106635 hypothetical protein - 8e-57 At5g20890 chaperonin, putative C.G. S.X.
0.01 3e-1 38 Ptp.6712.1.S1_at CV235223 hypothetical protein - 0 At5g20890 chaperonin, putative C.G. S.X.
0.02 3e-1 38 Ptp.1927.1.A1_at CK093004 - - 4e+0 At3g61190 BAP1 (BON ASSOCIATION PROTEIN 1) C.G. S.X.
0.03 1e+0 36 PtpAffx.32256.1.A1_at CK091464 hypothetical protein - 3e-6 At2g48020 sugar transporter, putative C.G. S.X.
0.03 1e+0 36 PtpAffx.32256.1.A1_a_at CK091464 hypothetical protein - 3e-6 At2g48020 sugar transporter, putative C.G. S.X.
0.02 1e+0 36 PtpAffx.26557.1.A1_at CV227891 hypothetical protein - 5e-10 At4g39790 unknown protein C.G. S.X.
0.01 4e+0 34 PtpAffx.9498.1.A1_at CV259314 - - 9e-16 At1g77420 hydrolase, alpha/beta fold family protein C.G. S.X.
0.02 4e+0 34 PtpAffx.78518.1.A1_at CV263509 hypothetical protein - 8e-22 At5g18840 sugar transporter, putative C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.28 2e-19 97 Arabidopsis thaliana At1g75220 843859 integral membrane protein, putative F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:plasma membrane, membrane;BMFPOAV - - - C.G. S.X.
0.31 1e-43 178 Glycine max Gma.4511.1.A1_at BI967611 - - 8e-16 At1g75220 integral membrane protein, putative C.G. S.X.
0.03 2e-6 54 Hordeum vulgare bags16h04_at bags16h04 - - 9e-5 At3g05400 sugar transporter, putative C.G. S.X.
0.07 6e-3 44 Oryza sativa Os05g0567800 AK108622.1 - Integral membrane protein 3e-6 At1g75220 integral membrane protein, putative C.G. S.X.
0.09 8e-4 46 Triticum aestivum TaAffx.141492.1.S1_at CA633696 - - 3e+0 At5g67350 unknown protein C.G. S.X.
0.24 1e-33 143 Vitis vinifera 1613638_at CF209803 hypothetical protein LOC100266019 - 4e-11 At1g75220 integral membrane protein, putative C.G. S.X.
0.04 1e-6 54 Zea mays Zm.3277.1.A1_at CO520691 hypothetical protein LOC100193700 - 2e-8 At1g75220 integral membrane protein, putative C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage