Gene omics information

Query gene ID	PtpAffx.207319.1.S1_s_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	91.1	PtpAffx.207319.1.S1_s_at	pmrna14508	hypothetical protein	-	3e-4	At4g37210	tetratricopeptide repeat (TPR)-containing protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.64	88.4	PtpAffx.163275.2.S1_at	CX173399	hypothetical protein	-	1e-13	At1g20200	EMB2719 (EMBRYO DEFECTIVE 2719)	S.X.	H.G.	Please selecteFP Browser (expression)
0.57	84.2	PtpAffx.161309.1.S1_s_at	CN520197	hypothetical protein	-	2e-6	At4g16830	nuclear RNA-binding protein (RGGA)	S.X.	H.G.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.120301.1.S1_s_at	CF235521	hypothetical protein	-	9e-2	At1g54360	TAF6B4 (TBP-ASSOCIATED FACTOR 6B4)	S.X.	H.G.	Please selecteFP Browser (expression)
0.48	75.4	PtpAffx.144914.1.S1_s_at	BU832760	hypothetical protein	-	7e-24	At4g27780	ACBP2 (ACYL-COA BINDING PROTEIN ACBP 2)	S.X.	H.G.	Please selecteFP Browser (expression)
0.45	72.3	PtpAffx.3977.1.S1_s_at	CA821307	hypothetical protein	-	2e-18	At5g52040	ATRSP41	S.X.	H.G.	Please selecteFP Browser (expression)
0.42	68.6	PtpAffx.12427.1.S1_at	CF230851	hypothetical protein	-	4e-10	At4g22150	PUX3	S.X.	H.G.	Please selecteFP Browser (expression)
0.42	68.6	PtpAffx.123989.1.S1_at	DN495946	-	-	8e-15	At5g67630	DNA helicase, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.39	64.6	PtpAffx.120301.1.S1_at	CF235521	-	-	9e-2	At1g54360	TAF6B4 (TBP-ASSOCIATED FACTOR 6B4)	S.X.	H.G.	Please selecteFP Browser (expression)
0.37	62.3	PtpAffx.207677.1.S1_s_at	pmrna15246	hypothetical protein	-	2e-73	At3g07100	protein transport protein Sec24, putative	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.4	94.0	GSM328285	Populus x canescens root control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.0	92.9	GSM328560	Populus x canescens root control_rep_11	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.0	92.9	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.7	91.8	GSM327398	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM328557	Populus x canescens root control_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM327380	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM328534	Populus x canescens root control_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM328533	Populus x canescens root hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM328483	Populus x canescens root control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM328561	Populus x canescens root control_rep_12	GSE13109	Effect of hypoxia on gene expression in Grey poplar

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.40	2e-49	196	PtpAffx.152715.1.S1_at	CB240351	hypothetical protein	-	3e-2	At5g66800	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.06	3e-20	99	PtpAffx.43020.1.A1_at	CV235044	hypothetical protein	-	4e-2	At5g40630	ubiquitin family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	4e-1	36	PtpAffx.220278.1.S1_at	pmrna36648	hypothetical protein	-	7e+0	At2g47930	AGP26 (ARABINOGALACTAN PROTEIN 26)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	4e-1	36	PtpAffx.207033.1.S1_at	pmrna13939	hypothetical protein	-	4e-14	At3g18730	TSK (TONSOKU)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	4e-1	36	PtpAffx.204464.1.S1_at	pmrna8751	hypothetical protein	-	8e-25	At5g22760	PHD finger family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	1e+0	34	PtpAffx.224722.1.S1_at	pmrna43534	hypothetical protein	-	1e-12	At4g21390	B120	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	1e+0	34	PtpAffx.206131.1.S1_at	pmrna12163	hypothetical protein	-	8e-1	At1g74990	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	1e+0	34	PtpAffx.203873.1.S1_at	pmrna7653	hypothetical protein	-	5e-3	At3g13770	pentatricopeptide (PPR) repeat-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	1e+0	34	PtpAffx.201507.1.S1_at	pmrna2968	SET domain protein	-	8e-37	At5g42400	SDG25 (SET DOMAIN PROTEIN 25)	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	3e-4	46	Arabidopsis thaliana	At4g37210	829875	tetratricopeptide repeat (TPR)-containing protein	F:binding;P:biological_process unknown;C:cellular_component unknown;MFOPBVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e+0	34	Glycine max	PsAffx.C240000015_at	PsAffx.C240000015	-	-	1e+0	At4g29020	glycine-rich protein	C.G.	S.X.	Please select
0.03	2e+0	32	Hordeum vulgare	Contig371_x_at	Contig371	-	-	4e+0	At5g07520	GRP18 (GLYCINE-RICH PROTEIN 18)	C.G.	S.X.	Please select
0.04	2e+0	34	Oryza sativa	OsAffx.16456.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	4e+0	32	Triticum aestivum	Ta.6192.3.A1_at	CA663431	-	-	3e-1	At3g33528	unknown protein	C.G.	S.X.	Please select
0.09	2e-21	101	Vitis vinifera	1615876_at	CF513558	hypothetical protein LOC100248980	-	4e-12	At4g37210	tetratricopeptide repeat (TPR)-containing protein	C.G.	S.X.	Please select
0.03	4e-1	34	Zea mays	Zm.4467.2.A1_at	AA979767	hypothetical protein LOC100193777	-	6e-9	At4g18440	adenylosuccinate lyase, putative / adenylosuccinase, putative	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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