Gene omics information

Query gene ID	PtpAffx.207242.1.S1_s_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	91.1	PtpAffx.207242.1.S1_s_at	pmrna14353	hypothetical protein	-	2e-20	At4g35470	leucine-rich repeat family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.55	82.2	PtpAffx.205481.1.S1_x_at	pmrna10842	hypothetical protein	-	5e-1	At5g17450	heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related	S.X.	H.G.	Please selecteFP Browser (expression)
0.44	71.9	PtpAffx.207242.1.S1_at	pmrna14353	hypothetical protein	-	2e-20	At4g35470	leucine-rich repeat family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.36	61.6	PtpAffx.31782.2.A1_a_at	CV272415	gtp-binding protein SAR1	-	4e-47	At1g09180	ATSARA1A (ARABIDOPSIS THALIANA SECRETION-ASSOCIATED RAS SUPER FAMILY 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.25	43.6	PtpAffx.11623.1.A1_at	CV260515	hypothetical protein	-	8e-25	At5g09850	transcription elongation factor-related	S.X.	H.G.	Please selecteFP Browser (expression)
0.22	38.3	PtpAffx.82259.1.A1_s_at	CV254342	hypothetical protein	-	4e-50	At1g20880	RNA recognition motif (RRM)-containing protein	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
9.7	98.9	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
8.9	98.7	GSM328533	Populus x canescens root hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
7.8	98.4	GSM328532	Populus x canescens root hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
6.6	97.9	GSM328484	Populus x canescens root hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
5.2	96.8	GSM328562	Populus x canescens root hypoxia_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.7	94.7	GSM327402	Populus balsamifera_20071015_Etiolated_seedling_6d_2	GSE13990	Populus balsamifera developmental tissue series
2.8	92.1	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.3	89.8	GSM327400	Populus balsamifera_20071015_Etiolated_seedling_6d_1	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM328566	Populus x canescens root hypoxia_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.98	0	2504	PtpAffx.207242.1.S1_at	pmrna14353	hypothetical protein	-	2e-20	At4g35470	leucine-rich repeat family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.89	0	1697	PtpAffx.205285.1.S1_at	pmrna10476	hypothetical protein	-	3e-19	At4g35470	leucine-rich repeat family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.20	5e-126	452	PtpAffx.31091.1.S1_at	CV248332	-	-	1e+0	At2g39790	mitochondrial glycoprotein family protein / MAM33 family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	3e-4	48	PtpAffx.90384.1.S1_at	CK108669	-	-	5e-1	At4g16610	zinc finger (C2H2 type) family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	3e-1	38	PtpAffx.210214.1.S1_at	pmrna20113	hypothetical protein	-	2e-24	At5g65770	LINC4 (LITTLE NUCLEI4)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	1e+0	36	PtpAffx.207293.1.S1_at	pmrna14465	cc-nbs-lrr resistance protein	-	4e-1	At2g23110	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	1e+0	36	PtpAffx.204367.1.S1_at	pmrna8582	hypothetical protein	-	1e-15	At4g38220	aminoacylase, putative / N-acyl-L-amino-acid amidohydrolase, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	1e+0	36	PtpAffx.204367.1.S1_s_at	pmrna8582	hypothetical protein	-	1e-15	At4g38220	aminoacylase, putative / N-acyl-L-amino-acid amidohydrolase, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	1e+0	36	Ptp.3066.1.S1_s_at	BU869804	hypothetical protein	-	2e-13	At4g38220	aminoacylase, putative / N-acyl-L-amino-acid amidohydrolase, putative	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.26	2e-20	101	Arabidopsis thaliana	At4g35470	829699	leucine-rich repeat family protein	F:protein binding;P:biological_process unknown;C:plasma membrane;MPBOFAV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.35	2e-39	165	Glycine max	GmaAffx.46385.2.S1_at	CA801989	-	-	4e-28	At4g35470	leucine-rich repeat family protein	C.G.	S.X.	Please select
0.04	7e-6	52	Hordeum vulgare	Contig11084_at	Contig11084	-	-	2e-4	At4g35470	leucine-rich repeat family protein	C.G.	S.X.	Please select
0.05	4e-1	38	Oryza sativa	Os08g0511700	AK065422.1	-	Leucine-rich repeat, typical subtype containingprotein	2e-4	At4g35470	leucine-rich repeat family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	2e-1	38	Triticum aestivum	Ta.19238.1.S1_at	CA649145	-	-	4e+0	At3g44950	glycine-rich protein	C.G.	S.X.	Please select
0.02	1e-2	40	Vitis vinifera	1622003_at	CF415247	hypothetical protein LOC100251511	-	3e-1	At3g15357	unknown protein	C.G.	S.X.	Please select
0.02	5e+0	32	Zea mays	Zm.428.1.S1_at	AF077372.1	hypothetical protein LOC100191335	-	8e-16	At5g17770	ATCBR (ARABIDOPSIS THALIANA NADH:CYTOCHROME B5 REDUCTASE 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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