CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.207186.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 99.2 PtpAffx.207186.1.S1_at pmrna14257 hypothetical protein - 1e-2 At5g04190 PKS4 (phytochrome kinase substrate 4) S.X. H.G.
0.61 87.0 PtpAffx.54825.1.S1_at DN486807 hypothetical protein - 7e-2 At4g24660 ATHB22 (HOMEOBOX PROTEIN 22) S.X. H.G.
0.44 71.9 PtpAffx.33509.2.S1_at CX174203 hypothetical protein - 3e-8 At5g44680 methyladenine glycosylase family protein S.X. H.G.
0.37 62.3 PtpAffx.208312.1.S1_at pmrna16531 hypothetical protein - 2e-7 At1g27210 binding S.X. H.G.
0.24 41.8 PtpAffx.10103.1.S1_at BP935213 hypothetical protein - 2e-9 At1g02270 endonuclease/exonuclease/phosphatase family protein / calcium-binding EF hand family protein S.X. H.G.
0.21 36.5 PtpAffx.53563.1.S1_s_at BU837678 - - 6e-1 At5g64180 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
16.9 99.6 GSM327402 Populus balsamifera_20071015_Etiolated_seedling_6d_2 GSE13990 Populus balsamifera developmental tissue series
14.7 99.5 GSM327400 Populus balsamifera_20071015_Etiolated_seedling_6d_1 GSE13990 Populus balsamifera developmental tissue series
12.9 99.3 GSM327403 Populus balsamifera_20071015_Etiolated_seedling_6d_3 GSE13990 Populus balsamifera developmental tissue series
5.2 96.8 GSM327397 Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_2 GSE13990 Populus balsamifera developmental tissue series
4.8 96.4 GSM327359 Populus balsamifera_20071015_Seedling_continuous_light_6d_3 GSE13990 Populus balsamifera developmental tissue series
3.4 94.0 GSM327380 Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1 GSE13990 Populus balsamifera developmental tissue series
3.3 93.7 GSM327281 Populus balsamifera_20071015_Seedling_continuous_light_6d_1 GSE13990 Populus balsamifera developmental tissue series
3.2 93.5 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.1 93.2 GSM327358 Populus balsamifera_20071015_Seedling_continuous_light_6d_2 GSE13990 Populus balsamifera developmental tissue series
1.9 87.2 GSM328059 Populus x canescens leaf control_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.83 0 1554 PtpAffx.205242.1.S1_at pmrna10387 hypothetical protein - 1e-2 At1g18810 phytochrome kinase substrate-related C.G. S.X.
0.20 2e-36 155 PtpAffx.153996.1.A1_at CV233388 hypothetical protein - 2e-1 At4g17215 unknown protein C.G. S.X.
0.20 2e-36 155 PtpAffx.153996.1.A1_s_at CV233388 hypothetical protein - 2e-1 At4g17215 unknown protein C.G. S.X.
0.02 1e+0 36 PtpAffx.92653.1.S1_at CK102908 hypothetical protein - 1e+0 At3g58220 - C.G. S.X.
0.01 1e+0 36 PtpAffx.4403.1.S1_a_at CV278254 hypothetical protein - 7e-45 At4g30780 unknown protein C.G. S.X.
0.01 1e+0 36 PtpAffx.4403.1.S1_at CV278254 hypothetical protein - 7e-45 At4g30780 unknown protein C.G. S.X.
0.01 1e+0 36 PtpAffx.37687.1.S1_at CV242270 hypothetical protein - 1e-63 At2g20130 LCV1 (LIKE COV 1) C.G. S.X.
0.02 1e+0 36 PtpAffx.212975.1.S1_s_at pmrna25381 hypothetical protein - 7e-5 At4g19670 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.01 1e+0 36 PtpAffx.202612.1.S1_at pmrna5226 - - 4e-3 At1g25320 leucine-rich repeat transmembrane protein kinase, putative C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e-2 42 Arabidopsis thaliana At5g04190 830297 PKS4 (phytochrome kinase substrate 4) Encodes phytochrome kinase substrate 4, a phytochrome signaling component involved in phototropism. - - - C.G. S.X.
0.06 3e-7 57 Glycine max GmaAffx.28996.1.A1_at BU548388 - - 2e-5 At5g04190 PKS4 (phytochrome kinase substrate 4) C.G. S.X.
0.02 6e+0 32 Hordeum vulgare Contig4157_s_at Contig4157 - - 1e-25 At1g60780 HAP13 (HAPLESS 13) C.G. S.X.
0.02 1e-1 40 Oryza sativa Os11g0215100 AK107711.1 - Plant disease resistance response protein familyprotein 4e-1 At1g21770 - C.G. S.X.
0.02 1e+1 32 Triticum aestivum TaAffx.79698.1.S1_at CA710378 - - 1e+1 At4g18460 D-Tyr-tRNA(Tyr) deacylase family protein C.G. S.X.
0.02 9e-1 34 Vitis vinifera 1610965_at BQ792732 - - 9e-1 At1g05730 unknown protein C.G. S.X.
0.02 5e+0 32 Zea mays Zm.6762.1.A1_at AI396242 hypothetical protein LOC100279105 - 2e+0 At5g38650 proteasome maturation factor UMP1 family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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