Gene omics information

Query gene ID	PtpAffx.20696.1.S1_at
Gene name
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	91.1	PtpAffx.20696.1.S1_at	CX654772	-	-	4e-5	At1g65690	harpin-induced protein-related / HIN1-related / harpin-responsive protein-related	S.X.	H.G.	Please selecteFP Browser (expression)
0.86	97.4	PtpAffx.99394.1.S1_at	CX176480	hypothetical protein	-	1e-18	At4g24290	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.82	96.3	PtpAffx.208739.1.S1_s_at	pmrna17329	hypothetical protein	-	2e-1	At1g66460	protein kinase family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.71	92.6	PtpAffx.10261.2.A1_at	CV253181	hypothetical protein	-	6e-4	At4g15120	VQ motif-containing protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.67	91.1	Ptp.5910.1.S1_at	AJ770523	aminophospholipid ATPase	-	2e-3	At1g68710	haloacid dehalogenase-like hydrolase family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.67	91.1	PtpAffx.154542.2.S1_at	AJ771909	hypothetical protein	-	1e-16	At1g54320	LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.67	91.1	PtpAffx.97764.1.S1_at	CB240411	hypothetical protein	-	1e-38	At2g33120	SAR1 (SYNAPTOBREVIN-RELATED PROTEIN 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.63	88.1	PtpAffx.417.3.A1_a_at	CV259584	cytochrome P450 /// cytochrome P450 /// hypothetical protein	-	3e-1	At3g44970	cytochrome P450 family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.56650.1.A1_s_at	CA823086	cytochrome P450	-	3e-2	At5g36220	CYP81D1 (CYTOCHROME P450 81D1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.48	75.4	PtpAffx.12059.1.S1_at	CA927399	hypothetical protein	-	4e-31	At3g01420	DOX1	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
19.4	99.7	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
7.9	98.4	GSM328533	Populus x canescens root hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
7.2	98.1	GSM328483	Populus x canescens root control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
6.5	97.8	GSM328484	Populus x canescens root hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
5.8	97.4	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
5.0	96.6	GSM328559	Populus x canescens root control_rep_10	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.6	96.2	GSM328292	Populus x canescens root control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.2	95.6	GSM328561	Populus x canescens root control_rep_12	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.2	95.6	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.5	94.3	GSM328281	Populus x canescens root control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.55	4e-169	595	PtpAffx.127435.1.A1_at	CV257866	hypothetical protein	-	9e-2	At3g04590	DNA-binding family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	1e-14	81	PtpAffx.54448.1.A1_at	DN492244	hypothetical protein	-	1e-14	At1g29410	PAI3 (phosphoribosylanthranilate isomerase 3)	C.G.	S.X.	Please selecteFP Browser (expression)
0.06	8e-4	46	PtpAffx.203794.1.S1_at	pmrna7493	hypothetical protein	-	1e-3	At1g54540	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	5e-2	40	PtpAffx.2542.2.S1_a_at	CN522327	hypothetical protein	-	7e-22	At5g47870	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	5e-2	40	PtpAffx.2542.2.S1_at	CN522327	hypothetical protein	-	7e-22	At5g47870	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	5e-2	40	PtpAffx.222252.1.S1_at	pmrna39543	hypothetical protein	-	2e-39	At2g47680	zinc finger (CCCH type) helicase family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	5e-2	40	PtpAffx.204700.1.S1_at	pmrna9259	hypothetical protein	-	2e-7	At3g19500	ethylene-responsive protein -related	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	5e-2	40	PtpAffx.204700.1.S1_x_at	pmrna9259	hypothetical protein	-	2e-7	At3g19500	ethylene-responsive protein -related	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	5e-2	40	PtpAffx.204700.1.S1_s_at	pmrna9259	hypothetical protein	-	2e-7	At3g19500	ethylene-responsive protein -related	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	4e-5	50	Arabidopsis thaliana	At1g65690	842880	harpin-induced protein-related / HIN1-related / harpin-responsive protein-related	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.20	1e-11	71	Glycine max	GmaAffx.59972.1.S1_at	BU550745	-	-	1e-1	At5g36970	NHL25 (NDR1/HIN1-LIKE 25)	C.G.	S.X.	Please select
0.03	7e-2	38	Hordeum vulgare	Contig21455_at	Contig21455	-	-	1e-11	At3g10090	40S ribosomal protein S28 (RPS28A)	C.G.	S.X.	Please select
0.03	3e-1	38	Oryza sativa	Os04g0456700	AK065178.1	-	Lipoxygenase, LH2 domain containing protein	3e-2	At1g72210	basic helix-loop-helix (bHLH) family protein (bHLH096)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	1e-1	38	Triticum aestivum	Ta.15679.1.S1_at	CA502710	-	-	1e-1	At5g50240	PIMT2 (PROTEIN-L-ISOASPARTATE METHYLTRANSFERASE 2)	C.G.	S.X.	Please select
0.02	2e-1	36	Vitis vinifera	1614311_at	CF516097	hypothetical protein LOC100264243	-	2e-6	At1g15780	unknown protein	C.G.	S.X.	Please select
0.03	9e-1	34	Zea mays	Zm.6247.1.S1_at	AF371267.1	alpha zein 19kDa D1	-	5e-1	At5g62360	invertase/pectin methylesterase inhibitor family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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