Gene omics information

Query gene ID	PtpAffx.206937.1.S1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.80	96.0	PtpAffx.206937.1.S1_at	pmrna13762	hypothetical protein	-	2e-71	At3g20320	TGD2 (TRIGALACTOSYLDIACYLGLYCEROL2)	S.X.	H.G.	Please selecteFP Browser (expression)
0.67	91.1	PtpAffx.144999.1.A1_s_at	CV244449	hypothetical protein	-	4e-1	At2g47840	tic20 protein-related	S.X.	H.G.	Please selecteFP Browser (expression)
0.40	67.0	PtpAffx.49222.1.S1_at	BP930894	hypothetical protein	-	9e-25	At5g16390	CAC1 (CHLOROPLASTIC ACETYLCOENZYME A CARBOXYLASE 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.36	61.6	Ptp.5334.1.S1_at	CX184723	hypothetical protein	-	1e-31	At1g69740	HEMB1	S.X.	H.G.	Please selecteFP Browser (expression)
0.32	55.2	Ptp.5867.1.S1_s_at	CV245725	hypothetical protein	-	1e-42	At1g04940	TIC20 (TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 20)	S.X.	H.G.	Please selecteFP Browser (expression)
0.23	40.5	PtpAffx.19666.1.A1_at	CV229370	hypothetical protein	-	3e-33	At1g09795	ATATP-PRT2 (ATP PHOSPHORIBOSYL TRANSFERASE 2)	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.4	97.0	GSM362884	Clone1979_LPI2_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
5.2	96.8	GSM372099	Clone3200_LPI5_N+_8w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.8	96.4	GSM362883	Clone1979_LPI2_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.2	95.6	GSM372090	Clone3200_LPI2_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.6	94.5	GSM372045	Clone1979_LPI5_N+_8w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.5	94.3	GSM328275	Populus x canescens leaf hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.8	92.1	GSM372089	Clone3200_LPI2_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.7	91.8	GSM328063	Populus x canescens leaf control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.5	90.9	GSM372044	Clone1979_LPI5_N+_8w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.2	89.3	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	2206	PtpAffx.206937.1.S1_x_at	pmrna13762	hypothetical protein	-	2e-71	At3g20320	TGD2 (TRIGALACTOSYLDIACYLGLYCEROL2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.92	0	1532	PtpAffx.222282.1.S1_at	pmrna39598	hypothetical protein	-	7e-53	At3g20320	TGD2 (TRIGALACTOSYLDIACYLGLYCEROL2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.92	0	1532	PtpAffx.222282.1.S1_x_at	pmrna39598	hypothetical protein	-	7e-53	At3g20320	TGD2 (TRIGALACTOSYLDIACYLGLYCEROL2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.48	0	652	PtpAffx.15017.2.A1_a_at	CV254853	hypothetical protein	-	3e-14	At3g20320	TGD2 (TRIGALACTOSYLDIACYLGLYCEROL2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.22	1e-85	317	Ptp.8124.1.S1_at	DN493065	-	-	1e-6	At3g20320	TGD2 (TRIGALACTOSYLDIACYLGLYCEROL2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	3e-3	44	PtpAffx.210111.1.S1_at	pmrna19923	hypothetical protein	-	8e-24	At1g10390	nucleoporin family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	1e-2	42	PtpAffx.201421.1.S1_at	pmrna2806	hypothetical protein	-	2e-21	At1g59660	nucleoporin family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	5e-2	40	PtpAffx.94471.1.S1_at	CK095540	hypothetical protein	-	1e-63	At4g33760	tRNA synthetase class II (D, K and N) family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	8e-1	36	PtpAffx.210201.1.S1_at	pmrna20096	hypothetical protein	-	9e-24	At3g19180	ARC6H	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.59	2e-71	270	Arabidopsis thaliana	At3g20320	821576	TGD2 (TRIGALACTOSYLDIACYLGLYCEROL2)	Encodes a permease-like component of an ABC transporter involved in lipid transfer from ER to chloroplast. A phosphatidic acid-binding protein with a predicted mycobacterial cell entry domain. It is tethered to the inner chloroplast envelope membrane facing the outer envelope membrane. Presumed bacterial orthologs of TGD1 and TGD2 in Gram-negative bacteria are typically organized in transcriptional units, suggesting their involvement in a common biological process.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.28	2e-35	151	Glycine max	GmaAffx.54349.1.S1_at	BF423988	-	-	2e-8	At3g20320	TGD2 (TRIGALACTOSYLDIACYLGLYCEROL2)	C.G.	S.X.	Please select
0.16	5e-9	61	Hordeum vulgare	Contig10777_at	Contig10777	-	-	2e-12	At3g20320	TGD2 (TRIGALACTOSYLDIACYLGLYCEROL2)	C.G.	S.X.	Please select
0.07	3e-7	57	Oryza sativa	Os01g0974000	AK121398.1	-	Mammalian cell entry related domain containingprotein	7e-14	At3g20320	TGD2 (TRIGALACTOSYLDIACYLGLYCEROL2)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.15	6e-10	65	Triticum aestivum	Ta.11992.1.S1_at	BQ171220	-	-	4e-11	At3g20320	TGD2 (TRIGALACTOSYLDIACYLGLYCEROL2)	C.G.	S.X.	Please select
0.29	3e-37	155	Vitis vinifera	1606982_at	CF609391	-	-	2e-5	At3g20320	TGD2 (TRIGALACTOSYLDIACYLGLYCEROL2)	C.G.	S.X.	Please select
0.08	7e-8	57	Zea mays	Zm.13356.1.S1_at	AY105810.1	-	-	2e-7	At3g20320	TGD2 (TRIGALACTOSYLDIACYLGLYCEROL2)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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