Gene omics information

Query gene ID	PtpAffx.206887.1.S1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.46	73.7	PtpAffx.206887.1.S1_at	pmrna13672	hypothetical protein	-	4e+0	At2g46030	UBC6 (ubiquitin-conjugating enzyme 6)	S.X.	H.G.	Please selecteFP Browser (expression)
0.40	67.0	PtpAffx.225384.1.S1_at	pmrna44698	hypothetical protein	-	1e-21	At5g45160	root hair defective 3 GTP-binding (RHD3) family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.38	63.7	PtpAffx.40315.1.S1_at	BU891653	-	-	9e+0	At5g28310	oxidoreductase-related	S.X.	H.G.	Please selecteFP Browser (expression)
0.35	59.7	PtpAffx.204963.1.S1_at	pmrna9815	GRAS family transcription factor	-	1e-1	At2g37650	scarecrow-like transcription factor 9 (SCL9)	S.X.	H.G.	Please selecteFP Browser (expression)
0.15	25.3	PtpAffx.203463.1.S1_at	pmrna6897	autoinhibited H+ ATPase	-	1e-44	At3g42640	AHA8 (Arabidopsis H(+)-ATPase 8)	S.X.	H.G.	Please selecteFP Browser (expression)
0.14	23.5	PtpAffx.95264.1.A1_at	CV254658	-	-	6e+0	At3g18280	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	S.X.	H.G.	Please selecteFP Browser (expression)

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
23.7	99.8	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
9.4	98.8	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
7.8	98.4	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
6.1	97.6	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
4.5	96.1	GSM362885	Clone1979_LPI2_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.6	91.3	GSM362886	Clone1979_LPI2_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.6	91.3	GSM372043	Clone1979_LPI5_N-_8w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.4	90.4	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.4	90.4	GSM372094	Clone3200_LPI5_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.2	89.3	GSM372095	Clone3200_LPI5_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.60	9e-138	490	PtpAffx.206885.1.S1_at	pmrna13669	hypothetical protein	-	2e+0	At5g20100	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.47	3e-79	295	PtpAffx.35499.1.A1_at	DN487863	hypothetical protein	-	1e+0	At4g15750	invertase/pectin methylesterase inhibitor family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.17	4e-35	149	Ptp.3682.1.A1_at	DN491528	hypothetical protein	-	4e+0	At5g52110	HCF208 (HIGH CHLOROPHYLL FLUORESCENCE 208)	C.G.	S.X.	Please selecteFP Browser (expression)
0.24	2e-21	103	PtpAffx.219104.1.S1_at	pmrna34925	hypothetical protein	-	1e-1	At3g16900	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.29	2e-21	103	PtpAffx.218228.1.S1_s_at	pmrna33778	hypothetical protein	-	8e-1	At4g27530	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.29	2e-21	103	PtpAffx.218228.1.S1_at	pmrna33778	hypothetical protein	-	8e-1	At4g27530	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.08	7e-9	61	PtpAffx.212110.1.S1_at	pmrna23751	hypothetical protein	-	3e+0	At3g44980	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.13	4e-4	46	PtpAffx.42093.1.A1_at	DN486031	hypothetical protein	-	1e+0	At2g35810	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.05	6e-3	42	PtpAffx.52291.1.A1_at	CK090724	-	-	6e-1	At3g29450	-	C.G.	S.X.	Please selecteFP Browser (expression)

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	4e+0	32	Arabidopsis thaliana	At2g46030	819211	UBC6 (ubiquitin-conjugating enzyme 6)	Ubiquitin conjugating enzyme E2	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	4e-1	36	Glycine max	Gma.4137.1.S1_at	BQ473688	-	-	8e-1	At3g05200	ATL6	C.G.	S.X.	Please select
0.04	9e+0	30	Hordeum vulgare	EBem05_SQ003_F24_s_at	EBem05_SQ003_F24	-	-	4e+0	At3g21710	unknown protein	C.G.	S.X.	Please select
0.03	9e+0	32	Oryza sativa	OsAffx.27938.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	1e+0	34	Triticum aestivum	TaAffx.112266.1.S1_x_at	CA625434	-	-	3e-8	At2g46030	UBC6 (ubiquitin-conjugating enzyme 6)	C.G.	S.X.	Please select
0.05	1e+0	32	Vitis vinifera	1610536_at	CA809629	-	-	4e+0	At4g21980	APG8A (AUTOPHAGY 8A)	C.G.	S.X.	Please select
0.03	2e+0	32	Zea mays	Zm.17670.1.A1_at	CF637959	-	-	6e+0	At5g59080	unknown protein	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage