CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.206842.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.60 86.0 PtpAffx.206842.1.S1_at pmrna13584 hypothetical protein - 2e-28 At4g31850 PGR3 (PROTON GRADIENT REGULATION 3) S.X. H.G.
0.80 96.0 PtpAffx.212549.1.S1_at pmrna24586 hypothetical protein - 2e-15 At5g53580 aldo/keto reductase family protein S.X. H.G.
0.67 91.1 PtpAffx.52156.2.A1_a_at CV270967 - - 6e-8 At5g03900 - S.X. H.G.
0.50 78.6 PtpAffx.4470.7.S1_s_at CF233997 hypothetical protein - 5e-103 At3g27925 DEGP1 (DegP protease 1) S.X. H.G.
0.40 67.0 Ptp.6017.1.S1_a_at CV235586 hypothetical protein - 1e-25 At3g15840 PIFI (post-illumination chlorophyll fluorescence increase) S.X. H.G.
0.40 67.0 PtpAffx.201153.1.S1_at pmrna2264 hypothetical protein - 0 At5g08650 GTP-binding protein LepA, putative S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
8.1 98.5 GSM372043 Clone1979_LPI5_N-_8w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
6.9 98.0 GSM372042 Clone1979_LPI5_N-_8w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
5.1 96.8 GSM372045 Clone1979_LPI5_N+_8w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.5 96.1 GSM372098 Clone3200_LPI5_N-_8w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.4 95.9 GSM372097 Clone3200_LPI5_N-_8w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.9 95.1 GSM372044 Clone1979_LPI5_N+_8w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.7 94.7 GSM372100 Clone3200_LPI5_N+_8w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.5 94.3 GSM362890 Clone1979_LPI5_N-_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.3 93.7 GSM372099 Clone3200_LPI5_N+_8w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.2 93.5 GSM328077 Populus x canescens leaf control_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.13 6e-146 519 PtpAffx.66788.1.S1_at DN495647 hypothetical protein - 2e+0 At1g63330 pentatricopeptide (PPR) repeat-containing protein C.G. S.X.
0.01 1e-1 40 PtpAffx.213488.1.S1_at pmrna26365 hypothetical protein - 9e-19 At1g26500 pentatricopeptide (PPR) repeat-containing protein C.G. S.X.
0.01 1e-1 40 PtpAffx.207333.1.S1_at pmrna14545 hypothetical protein - 3e-1 At5g38220 hydrolase C.G. S.X.
0.01 1e-1 40 PtpAffx.147001.1.A1_at CV255167 hypothetical protein - 1e+0 At5g45940 atnudt11 (Arabidopsis thaliana Nudix hydrolase homolog 11) C.G. S.X.
0.01 6e-1 38 PtpAffx.224989.1.S1_at pmrna43956 hypothetical protein - 2e-11 At1g31840 - C.G. S.X.
0.01 6e-1 38 PtpAffx.217556.1.S1_s_at pmrna32870 hypothetical protein - 4e-1 At1g04490 unknown protein C.G. S.X.
0.01 6e-1 38 PtpAffx.214513.1.S1_at pmrna28224 hypothetical protein - 7e-5 At4g32070 octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein C.G. S.X.
0.01 6e-1 38 PtpAffx.208595.1.S1_at pmrna17059 hypothetical protein - 1e-2 At3g15130 pentatricopeptide (PPR) repeat-containing protein C.G. S.X.
0.01 6e-1 38 PtpAffx.208485.1.S1_at pmrna16856 hypothetical protein - 4e-71 At3g06920 pentatricopeptide (PPR) repeat-containing protein C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.21 2e-28 129 Arabidopsis thaliana At4g31850 829314 PGR3 (PROTON GRADIENT REGULATION 3) encodes a protein containing 27 pentatrico-peptide repeat (PPR) motifs - - - C.G. S.X.
0.01 2e+0 36 Glycine max GmaAffx.74500.1.A1_at BU551117 - - 1e+0 At3g08762 unknown protein C.G. S.X.
0.01 2e-1 38 Hordeum vulgare Contig9613_at Contig9613 - - 2e-15 At5g53490 thylakoid lumenal 17.4 kDa protein, chloroplast C.G. S.X.
0.01 2e-1 40 Oryza sativa Os08g0107800 AK070902.1 - - 1e+0 At3g12660 FLA14 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 14 PRECURSOR) C.G. S.X.
0.01 2e+0 36 Triticum aestivum TaAffx.64082.1.S1_at BJ316151 - - 4e+0 At4g32130 carbohydrate binding C.G. S.X.
0.01 3e-2 40 Vitis vinifera 1617471_at BQ796087 hypothetical protein LOC100266752 - 1e+0 Atmg00850 - C.G. S.X.
0.01 3e+0 34 Zea mays Zm.19361.1.A1_at CO534290 hypothetical protein LOC100273777 - 2e-6 At5g64470 unknown protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage