CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.206787.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.46 73.7 PtpAffx.206787.1.S1_at pmrna13472 hypothetical protein - 7e-2 At1g11440 - S.X. H.G.
0.43 69.7 PtpAffx.120602.1.A1_at CV272515 - - 1e+0 At4g21200 GA2OX8 (GIBBERELLIN 2-OXIDASE 8) S.X. H.G.
0.36 61.6 PtpAffx.203463.1.S1_at pmrna6897 autoinhibited H+ ATPase - 1e-44 At3g42640 AHA8 (Arabidopsis H(+)-ATPase 8) S.X. H.G.
0.33 57.5 PtpAffx.223223.1.S1_at pmrna41102 - - 5e-4 At1g48210 serine/threonine protein kinase, putative S.X. H.G.
0.31 53.7 PtpAffx.147823.2.A1_at CV227944 hypothetical protein - 8e-2 At4g29130 HXK1 (HEXOKINASE 1) S.X. H.G.
0.14 23.5 PtpAffx.224791.1.S1_s_at pmrna43641 hypothetical protein - 3e-3 At5g44390 FAD-binding domain-containing protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
35.5 100.0 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
14.3 99.5 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
13.0 99.4 GSM327658 Populus balsamifera_Female_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
3.1 93.2 GSM328062 Populus x canescens leaf control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.5 90.9 GSM327412 Populus balsamifera_1006_differentiating_xylem_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.4 90.4 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.2 89.3 GSM362888 Clone1979_LPI5_N+_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.6 84.5 GSM327659 Populus balsamifera_Male_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
1.6 84.5 GSM362883 Clone1979_LPI2_N+_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.5 83.5 GSM362886 Clone1979_LPI2_N-_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.07 3e-8 57 PtpAffx.206788.1.S1_at pmrna13473 hypothetical protein - 3e-2 At3g15720 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein C.G. S.X.
0.03 1e-1 36 PtpAffx.210067.1.S1_at pmrna19831 hypothetical protein - 1e-1 At3g20340 - C.G. S.X.
0.05 4e-1 34 PtpAffx.82525.1.A1_at CV243444 - - 1e+0 At2g19960 hAT dimerisation domain-containing protein / transposase-related C.G. S.X.
0.02 4e-1 34 PtpAffx.225059.1.S1_at pmrna44140 ammonium transporter - 1e-5 At2g38290 ATAMT2 (AMMONIUM TRANSPORTER 2) C.G. S.X.
0.06 4e-1 34 PtpAffx.214070.1.S1_x_at pmrna27404 hypothetical protein - 1e-2 At5g22200 harpin-induced family protein / HIN1 family protein / harpin-responsive family protein C.G. S.X.
0.04 2e+0 32 PtpAffx.9582.3.A1_a_at BU874390 hypothetical protein - 6e-52 At5g43010 RPT4A C.G. S.X.
0.04 2e+0 32 PtpAffx.9582.3.A1_at BU874390 hypothetical protein - 6e-52 At5g43010 RPT4A C.G. S.X.
0.03 2e+0 32 PtpAffx.92286.1.A1_at CV257874 hypothetical protein - 2e-9 At4g29680 type I phosphodiesterase/nucleotide pyrophosphatase family protein C.G. S.X.
0.01 2e+0 32 PtpAffx.224335.1.S1_at pmrna42790 - - 3e-4 At5g23570 SGS3 (SUPPRESSOR OF GENE SILENCING 3) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 7e-2 36 Arabidopsis thaliana At1g11440 837686 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPVBA - - - C.G. S.X.
0.04 2e+0 32 Glycine max Gma.16783.1.A1_at BU545488 - - 3e-1 At5g49120 senescence-associated protein-related C.G. S.X.
0.07 5e-1 32 Hordeum vulgare HA04h14r_at HA04h14r - - 1e-2 At5g66400 RAB18 (RESPONSIVE TO ABA 18) C.G. S.X.
0.02 2e+0 32 Oryza sativa Os01g0622700 AK064316.1 - Conserved hypothetical protein 1e-5 At2g46225 ABIL1 (Abi-1-like 1) C.G. S.X.
0.06 1e+0 32 Triticum aestivum Ta.2641.2.S1_a_at CA674419 - - 2e-11 At5g53460 GLT1 C.G. S.X.
0.03 5e+0 28 Vitis vinifera 1612757_at CD801743 hypothetical protein LOC100241266 - 1e+0 At2g32560 F-box family protein C.G. S.X.
0.03 5e-1 32 Zea mays Zm.8452.1.A1_at BM341525 - - 8e+0 At5g20820 auxin-responsive protein-related C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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