Gene omics information

Query gene ID PtpAffx.206762.1.S1_at
Gene name
Organism Populus trichocarpa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.6187.0PtpAffx.206762.1.S1_atpmrna13424--3e-2At1g80330GA3OX4 (GIBBERELLIN 3-OXIDASE 4)S.X.H.G.
0.6187.0PtpAffx.147163.1.A1_atCV267314hypothetical protein-4e-1At4g23260ATP binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinaseS.X.H.G.
0.3661.6PtpAffx.249.353.A1_atCV273034--5e-1At2g04070antiporter/ drug transporter/ transporterS.X.H.G.
0.3052.0PtpAffx.152255.1.S1_atCV274461--4e-60At1g52980GTP-binding family proteinS.X.H.G.
0.1525.3PtpAffx.125515.1.S1_atCX173846--8e+0At4g16410unknown proteinS.X.H.G.
0.0711.6PtpAffx.219237.1.S1_atpmrna35094multidrug resistance protein ABC transporter family-2e-12At1g30410ATMRP13S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
28.899.9GSM327409Populus balsamifera_1006_root_midday_3GSE13990Populus balsamifera developmental tissue series
12.899.3GSM327408Populus balsamifera_1006_root_midday_2GSE13990Populus balsamifera developmental tissue series
6.297.6GSM244431non infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
5.096.6GSM244441Mixed infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
4.696.2GSM244430non infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.594.3GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.193.2GSM244438Mmd infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.490.4GSM327407Populus balsamifera_1006_root_midday_1GSE13990Populus balsamifera developmental tissue series
2.289.3GSM244436Mmd infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.088.0GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue series
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.8701055PtpAffx.214178.1.S1_atpmrna27576gibberellin 3-oxidase-5e-1At1g80330GA3OX4 (GIBBERELLIN 3-OXIDASE 4)C.G.S.X.
0.231e-82307PtpAffx.142169.1.S1_atCK107354--2e-1At4g33925unknown proteinC.G.S.X.
0.022e-138PtpAffx.201234.1.S1_atpmrna2450hypothetical protein-4e-2At1g773301-aminocyclopropane-1-carboxylate oxidase, putative / ACC oxidase, putativeC.G.S.X.
0.022e-138PtpAffx.123565.1.S1_atBU829458hypothetical protein-9e-36At1g36050unknown proteinC.G.S.X.
0.027e-136PtpAffx.95826.1.A1_atCV231266--2e-12At1g34300lectin protein kinase family proteinC.G.S.X.
0.027e-136PtpAffx.225592.1.S1_x_atpmrna45048hypothetical protein-1e-38At1g34300lectin protein kinase family proteinC.G.S.X.
0.027e-136PtpAffx.225592.1.S1_s_atpmrna45048hypothetical protein-1e-38At1g34300lectin protein kinase family proteinC.G.S.X.
0.017e-136PtpAffx.212929.1.S1_atpmrna25294hypothetical protein-6e-20At5g50970WD-40 repeat family proteinC.G.S.X.
0.017e-136PtpAffx.210700.1.S1_atpmrna20982hypothetical protein-4e-27At5g50970WD-40 repeat family proteinC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.033e-240Arabidopsis thalianaAt1g80330844373GA3OX4 (GIBBERELLIN 3-OXIDASE 4)Encodes a protein with gibberellin 3-oxidase activity. The enzyme, expressed and purified in E.coli, was shown to catalyze the 3β-hydroxylation of GA20 into GA29.---C.G.S.X.
0.085e-859Glycine maxGmaAffx.57581.1.S1_atBE824158--3e-1At4g20290unknown proteinC.G.S.X.
0.034e+032Hordeum vulgareHVSMEn0009E17f_atHVSMEn0009E17f--4e-1At5g5985040S ribosomal protein S15A (RPS15aF)C.G.S.X.
0.014e+034Oryza sativaOs.50840.1.S1_at---0C.G.S.X.
0.022e+034Triticum aestivumTaAffx.50823.1.S1_atCA734930--4e+0At1g27300unknown proteinC.G.S.X.
0.022e+032Vitis vinifera1608829_atCD802477hypothetical protein LOC100258592-9e-24At4g03415catalytic/ protein serine/threonine phosphataseC.G.S.X.
0.032e-136Zea maysZmAffx.388.1.A1_atAI673984hypothetical protein LOC100279879-3e+0At5g18270ANAC087C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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