Gene omics information

Query gene ID	PtpAffx.206762.1.S1_at
Gene name
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.61	87.0	PtpAffx.206762.1.S1_at	pmrna13424	-	-	3e-2	At1g80330	GA3OX4 (GIBBERELLIN 3-OXIDASE 4)	S.X.	H.G.	Please selecteFP Browser (expression)
0.61	87.0	PtpAffx.147163.1.A1_at	CV267314	hypothetical protein	-	4e-1	At4g23260	ATP binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase	S.X.	H.G.	Please selecteFP Browser (expression)
0.36	61.6	PtpAffx.249.353.A1_at	CV273034	-	-	5e-1	At2g04070	antiporter/ drug transporter/ transporter	S.X.	H.G.	Please selecteFP Browser (expression)
0.30	52.0	PtpAffx.152255.1.S1_at	CV274461	-	-	4e-60	At1g52980	GTP-binding family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.15	25.3	PtpAffx.125515.1.S1_at	CX173846	-	-	8e+0	At4g16410	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.07	11.6	PtpAffx.219237.1.S1_at	pmrna35094	multidrug resistance protein ABC transporter family	-	2e-12	At1g30410	ATMRP13	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
28.8	99.9	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
12.8	99.3	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
6.2	97.6	GSM244431	non infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
5.0	96.6	GSM244441	Mixed infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
4.6	96.2	GSM244430	non infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.5	94.3	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.1	93.2	GSM244438	Mmd infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.4	90.4	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM244436	Mmd infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.0	88.0	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.87	0	1055	PtpAffx.214178.1.S1_at	pmrna27576	gibberellin 3-oxidase	-	5e-1	At1g80330	GA3OX4 (GIBBERELLIN 3-OXIDASE 4)	C.G.	S.X.	Please selecteFP Browser (expression)
0.23	1e-82	307	PtpAffx.142169.1.S1_at	CK107354	-	-	2e-1	At4g33925	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e-1	38	PtpAffx.201234.1.S1_at	pmrna2450	hypothetical protein	-	4e-2	At1g77330	1-aminocyclopropane-1-carboxylate oxidase, putative / ACC oxidase, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e-1	38	PtpAffx.123565.1.S1_at	BU829458	hypothetical protein	-	9e-36	At1g36050	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	7e-1	36	PtpAffx.95826.1.A1_at	CV231266	-	-	2e-12	At1g34300	lectin protein kinase family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	7e-1	36	PtpAffx.225592.1.S1_x_at	pmrna45048	hypothetical protein	-	1e-38	At1g34300	lectin protein kinase family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	7e-1	36	PtpAffx.225592.1.S1_s_at	pmrna45048	hypothetical protein	-	1e-38	At1g34300	lectin protein kinase family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	7e-1	36	PtpAffx.212929.1.S1_at	pmrna25294	hypothetical protein	-	6e-20	At5g50970	WD-40 repeat family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	7e-1	36	PtpAffx.210700.1.S1_at	pmrna20982	hypothetical protein	-	4e-27	At5g50970	WD-40 repeat family protein	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	3e-2	40	Arabidopsis thaliana	At1g80330	844373	GA3OX4 (GIBBERELLIN 3-OXIDASE 4)	Encodes a protein with gibberellin 3-oxidase activity. The enzyme, expressed and purified in E.coli, was shown to catalyze the 3β-hydroxylation of GA20 into GA29.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.08	5e-8	59	Glycine max	GmaAffx.57581.1.S1_at	BE824158	-	-	3e-1	At4g20290	unknown protein	C.G.	S.X.	Please select
0.03	4e+0	32	Hordeum vulgare	HVSMEn0009E17f_at	HVSMEn0009E17f	-	-	4e-1	At5g59850	40S ribosomal protein S15A (RPS15aF)	C.G.	S.X.	Please select
0.01	4e+0	34	Oryza sativa	Os.50840.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	2e+0	34	Triticum aestivum	TaAffx.50823.1.S1_at	CA734930	-	-	4e+0	At1g27300	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	Vitis vinifera	1608829_at	CD802477	hypothetical protein LOC100258592	-	9e-24	At4g03415	catalytic/ protein serine/threonine phosphatase	C.G.	S.X.	Please select
0.03	2e-1	36	Zea mays	ZmAffx.388.1.A1_at	AI673984	hypothetical protein LOC100279879	-	3e+0	At5g18270	ANAC087	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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