CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.206254.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.77 94.9 PtpAffx.206254.1.S1_at pmrna12413 hypothetical protein - 1e-1 At2g07280 unknown protein S.X. H.G.
0.67 91.1 PtpAffx.210127.1.S1_at pmrna19956 hypothetical protein - 7e-21 At3g15850 FAD5 (FATTY ACID DESATURASE 5) S.X. H.G.
0.60 86.0 PtpAffx.219994.1.S1_at pmrna36219 hypothetical protein - 6e-2 At1g09932 phosphoglycerate/bisphosphoglycerate mutase-related S.X. H.G.
0.55 82.2 PtpAffx.69725.1.S1_a_at DN494612 hypothetical protein - 1e+0 At2g41130 basic helix-loop-helix (bHLH) family protein S.X. H.G.
0.46 73.7 PtpAffx.209373.1.S1_at pmrna18564 hypothetical protein - 3e-3 At3g45740 hydrolase family protein / HAD-superfamily protein S.X. H.G.
0.36 61.6 PtpAffx.30128.1.S1_at CV244941 hypothetical protein - 3e+0 At2g23910 cinnamoyl-CoA reductase-related S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
29.3 99.9 GSM372098 Clone3200_LPI5_N-_8w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
23.8 99.8 GSM372097 Clone3200_LPI5_N-_8w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
8.0 98.4 GSM372096 Clone3200_LPI5_N-_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
5.0 96.6 GSM372095 Clone3200_LPI5_N-_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.5 94.3 GSM372099 Clone3200_LPI5_N+_8w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.7 91.8 GSM372100 Clone3200_LPI5_N+_8w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.6 91.3 GSM372094 Clone3200_LPI5_N+_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.0 88.0 GSM372091 Clone3200_LPI2_N-_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.2 79.6 GSM362886 Clone1979_LPI2_N-_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.1 78.0 GSM334224 Populus balsamifera_1006_mature_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 5e-2 40 PtpAffx.219767.1.S1_at pmrna35828 white-brown-complex ABC transporter family - 7e-46 At2g37010 ATNAP12 C.G. S.X.
0.01 2e-1 38 PtpAffx.225306.1.S1_s_at pmrna44562 hypothetical protein - 1e+0 At4g05100 AtMYB74 (myb domain protein 74) C.G. S.X.
0.01 2e-1 38 PtpAffx.225347.1.S1_at pmrna44638 hypothetical protein - 8e-1 At5g18730 - C.G. S.X.
0.01 7e-1 36 PtpAffx.8143.1.S1_s_at AF302497.1 nadph-cytochrome P450 oxydoreductase - 3e-38 At4g30210 ATR2 (ARABIDOPSIS P450 REDUCTASE 2) C.G. S.X.
0.02 7e-1 36 PtpAffx.201115.1.S1_at pmrna2198 AP2/ERF domain-containing transcription factor - 9e-21 At1g80580 ethylene-responsive element-binding family protein C.G. S.X.
0.02 3e+0 34 PtpAffx.27983.1.S1_at DN498846 - - 4e+0 At5g25640 - C.G. S.X.
0.02 3e+0 34 PtpAffx.218282.1.S1_at pmrna33836 folylpolyglutamate synthase - 1e-11 At5g41480 GLA1 (GLOBULAR ARREST1) C.G. S.X.
0.02 3e+0 34 PtpAffx.213422.1.S1_at pmrna26247 hypothetical protein - 3e-4 At2g36050 OFP15 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 15) C.G. S.X.
0.03 3e+0 34 PtpAffx.213129.1.S1_at pmrna25694 hypothetical protein - 5e+0 At5g40000 AAA-type ATPase family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 1e-1 38 Arabidopsis thaliana At2g07280 815298 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P - - - C.G. S.X.
0.03 3e+0 34 Glycine max GmaAffx.42271.1.S1_at BQ628705 - - 4e+0 At5g25340 unknown protein C.G. S.X.
0.02 4e+0 32 Hordeum vulgare EBro02_SQ007_J14_at EBro02_SQ007_J14 - - 2e+0 At2g22155 - C.G. S.X.
0.02 4e+0 34 Oryza sativa OsAffx.29485.1.S1_at - - - 0 C.G. S.X.
0.03 1e-1 38 Triticum aestivum Ta.14958.1.S1_at CA685606 - - 4e+0 At3g17580 unknown protein C.G. S.X.
0.02 2e-1 36 Vitis vinifera 1614105_at CB968800 hypothetical protein LOC100243322 - 8e-8 At1g59900 AT-E1 ALPHA C.G. S.X.
0.02 6e-2 38 Zea mays Zm.3174.1.A1_at BM072921 AP-2 complex subunit sigma-1 - 5e-50 At1g47830 clathrin coat assembly protein, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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