Gene omics information

Query gene ID	PtpAffx.206211.1.S1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.61	87.0	PtpAffx.206211.1.S1_at	pmrna12333	hypothetical protein	-	2e-19	At3g13060	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.67	91.1	PtpAffx.206211.1.S1_x_at	pmrna12333	hypothetical protein	-	2e-19	At3g13060	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.60	86.0	PtpAffx.201816.1.S1_s_at	pmrna3616	hypothetical protein	-	4e-54	At1g21370	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.29	50.5	PtpAffx.213948.1.S1_at	pmrna27191	hypothetical protein	-	1e-30	At5g15270	KH domain-containing protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.20	34.6	Ptp.3628.1.S1_s_at	CV237125	hypothetical protein	-	1e-21	At4g32330	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.15	25.3	Ptp.6424.1.S1_at	DN493610	hypothetical protein	-	1e-7	At3g24160	PMP (PUTATIVE TYPE 1 MEMBRANE PROTEIN)	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.5	96.1	GSM328557	Populus x canescens root control_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.4	95.9	GSM328561	Populus x canescens root control_rep_12	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.3	95.8	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.2	95.6	GSM328285	Populus x canescens root control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.9	95.1	GSM328277	Populus x canescens root control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.8	94.9	GSM328483	Populus x canescens root control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.4	94.0	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.3	93.7	GSM328559	Populus x canescens root control_rep_10	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.3	93.7	GSM328281	Populus x canescens root control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.2	93.5	GSM328292	Populus x canescens root control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	2581	PtpAffx.206211.1.S1_x_at	pmrna12333	hypothetical protein	-	2e-19	At3g13060	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.79	0	1055	PtpAffx.217256.1.S1_at	pmrna32445	hypothetical protein	-	4e-30	At5g58190	ECT10	C.G.	S.X.	Please selecteFP Browser (expression)
0.79	0	1055	PtpAffx.217256.1.S1_x_at	pmrna32445	hypothetical protein	-	4e-30	At5g58190	ECT10	C.G.	S.X.	Please selecteFP Browser (expression)
0.35	2e-115	416	PtpAffx.100024.1.A1_at	BP934019	-	-	3e-1	At5g58190	ECT10	C.G.	S.X.	Please selecteFP Browser (expression)
0.08	3e-22	107	PtpAffx.43525.1.S1_at	CV268206	hypothetical protein	-	3e-14	At3g13060	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.10	1e-6	56	PtpAffx.4959.1.A1_at	CK115948	hypothetical protein	-	2e-21	At3g13060	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.09	6e-5	50	PtpAffx.207919.1.S1_s_at	pmrna15718	hypothetical protein	-	1e-18	At3g03950	protein binding	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e-4	48	PtpAffx.1572.1.S1_at	CK095272	hypothetical protein	-	7e-27	At1g79270	ECT8 (evolutionarily conserved C-terminal region 8)	C.G.	S.X.	Please selecteFP Browser (expression)
0.05	1e-3	46	Ptp.933.1.A1_s_at	CV240271	hypothetical protein	-	1e-1	At3g13460	ECT2	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.22	2e-19	97	Arabidopsis thaliana	At3g13060	820492	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.11	1e-3	46	Glycine max	GmaAffx.78777.1.S1_at	BF424078	-	-	3e-18	At1g48110	ECT7 (evolutionarily conserved C-terminal region 7)	C.G.	S.X.	Please select
0.11	1e-9	63	Hordeum vulgare	Contig6384_at	Contig6384	-	-	8e-20	At3g13460	ECT2	C.G.	S.X.	Please select
0.13	5e-34	147	Oryza sativa	Os08g0556000	AK068463.1	-	YT521-B-like protein family protein	9e-45	At3g13060	-	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.10	2e-7	57	Triticum aestivum	Ta.7012.1.S1_at	CA655798	-	-	6e-12	At3g13060	-	C.G.	S.X.	Please select
0.04	8e-4	44	Vitis vinifera	1607831_at	BQ799075	hypothetical protein LOC100249242	-	8e-7	At3g03950	protein binding	C.G.	S.X.	Please select
0.07	7e-2	38	Zea mays	Zm.5103.1.A1_at	AI600852	-	-	3e-15	At3g13460	ECT2	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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