CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.206196.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.53 80.5 PtpAffx.206196.1.S1_at pmrna12304 hypothetical protein - 4e-19 At2g19090 unknown protein S.X. H.G.
0.57 84.2 PtpAffx.209407.1.S1_at pmrna18634 hypothetical protein - 2e-39 At2g38970 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
0.44 71.9 PtpAffx.204628.1.S1_s_at pmrna9099 hypothetical protein - 3e+0 At4g00232 unknown protein S.X. H.G.
0.35 59.7 Ptp.2035.1.S1_s_at BU894397 hypothetical protein - 3e-21 At4g24060 Dof-type zinc finger domain-containing protein S.X. H.G.
0.33 57.5 PtpAffx.56940.1.A1_at CV243741 hypothetical protein - 1e-2 At5g62900 unknown protein S.X. H.G.
0.31 53.7 PtpAffx.221194.1.S1_x_at pmrna37884 hypothetical protein - 1e-2 At5g42830 transferase family protein S.X. H.G.
0.30 52.0 PtpAffx.9361.1.A1_at CV241621 hypothetical protein - 1e-6 At1g77660 MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein /phosphatidylinositol-4-phosphate 5-kinase-related S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
13.9 99.4 GSM327408 Populus balsamifera_1006_root_midday_2 GSE13990 Populus balsamifera developmental tissue series
8.2 98.5 GSM327409 Populus balsamifera_1006_root_midday_3 GSE13990 Populus balsamifera developmental tissue series
7.6 98.3 GSM328560 Populus x canescens root control_rep_11 GSE13109 Effect of hypoxia on gene expression in Grey poplar
6.7 97.9 GSM327407 Populus balsamifera_1006_root_midday_1 GSE13990 Populus balsamifera developmental tissue series
6.0 97.5 GSM328285 Populus x canescens root control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.7 91.8 GSM328557 Populus x canescens root control_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.6 91.3 GSM328558 Populus x canescens root control_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.5 90.9 GSM328532 Populus x canescens root hypoxia_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.4 90.4 GSM328561 Populus x canescens root control_rep_12 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.4 90.4 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.12 6e-62 240 PtpAffx.202851.1.S1_s_at pmrna5642 hypothetical protein - 4e-1 At1g07960 ATPDIL5-1 (PDI-like 5-1) C.G. S.X.
0.09 7e-37 157 PtpAffx.48150.1.S1_at DN494894 - - 6e+0 At5g45890 SAG12 (SENESCENCE-ASSOCIATED GENE 12) C.G. S.X.
0.15 6e-25 117 PtpAffx.214625.1.S1_at pmrna28421 hypothetical protein - 2e+0 At4g30130 unknown protein C.G. S.X.
0.03 2e-6 56 PtpAffx.204346.1.S1_at pmrna8546 hypothetical protein - 5e-15 At4g35240 unknown protein C.G. S.X.
0.02 4e-4 48 PtpAffx.204490.1.S1_at pmrna8812 hypothetical protein - 5e-22 At2g17110 unknown protein C.G. S.X.
0.02 4e-4 48 PtpAffx.203071.1.S1_at pmrna6078 hypothetical protein - 1e-12 At3g51290 proline-rich family protein C.G. S.X.
0.01 2e-3 46 PtpAffx.97969.1.S1_at CA925570 hypothetical protein - 6e-15 At1g21740 unknown protein C.G. S.X.
0.02 7e-3 44 PtpAffx.221995.1.S1_at pmrna39178 hypothetical protein - 1e-3 At5g56950 NAP1 C.G. S.X.
0.01 7e-3 44 PtpAffx.201562.1.S1_at pmrna3066 hypothetical protein - 2e-2 At2g17110 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.16 4e-19 97 Arabidopsis thaliana At2g19090 816426 unknown protein F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;PMOFBV - - - C.G. S.X.
0.07 8e-18 93 Glycine max Gma.14153.1.A1_at CD416508 bZIP transcription factor bZIP82 - 3e+0 At5g52450 MATE efflux protein-related C.G. S.X.
0.02 9e-3 42 Hordeum vulgare Contig5793_at Contig5793 - - 1e-1 At5g23950 C2 domain-containing protein C.G. S.X.
0.03 1e-8 63 Oryza sativa Os09g0542500 9637.m03134 - Protein of unknown function DUF630 domaincontaining protein 1e-3 At2g27090 unknown protein C.G. S.X.
0.03 3e-4 48 Triticum aestivum TaAffx.23859.1.S1_at CA729447 - - 3e-1 At4g15030 unknown protein C.G. S.X.
0.02 6e-3 42 Vitis vinifera 1609773_at CB978867 hypothetical protein LOC100261732 - 1e+0 At3g11600 unknown protein C.G. S.X.
0.02 1e-1 38 Zea mays Zm.6246.2.A1_at AI677558 - - 9e-7 At2g22080 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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