Gene omics information

Query gene ID	PtpAffx.206163.1.S1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.59	84.9	PtpAffx.206163.1.S1_at	pmrna12232	hypothetical protein	-	5e-13	At2g41480	electron carrier/ heme binding / peroxidase	S.X.	H.G.	Please selecteFP Browser (expression)
0.29	50.5	PtpAffx.219632.1.S1_at	pmrna35594	hypothetical protein	-	2e+0	At4g24070	carbon-carbon lyase	S.X.	H.G.	Please selecteFP Browser (expression)
0.24	41.8	PtpAffx.140465.1.A1_at	CV257226	-	-	1e+1	At4g07825	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.21	36.5	PtpAffx.200917.1.S1_at	pmrna1808	hypothetical protein	-	9e-35	At2g30130	ASL5	S.X.	H.G.	Please selecteFP Browser (expression)
0.18	30.8	PtpAffx.77335.1.S1_at	DN493413	hypothetical protein	-	4e-1	At2g29450	ATGSTU5 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 5)	S.X.	H.G.	Please selecteFP Browser (expression)
0.14	23.5	PtpAffx.18039.1.A1_at	CV263969	-	-	1e-3	At2g47060	serine/threonine protein kinase, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.14	23.5	PtpAffx.36788.2.S1_at	CK106901	hypothetical protein	-	1e-6	At4g36450	ATMPK14 (Mitogen-activated protein kinase 14)	S.X.	H.G.	Please selecteFP Browser (expression)
0.11	18.1	PtpAffx.77318.2.S1_at	CX658035	hypothetical protein	-	5e-4	At3g12500	ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE)	S.X.	H.G.	Please selecteFP Browser (expression)
0.09	14.6	PtpAffx.211137.1.S1_at	pmrna21879	hypothetical protein	-	5e-8	At3g03540	NPC5 (NON-SPECIFIC PHOSPHOLIPASE C5)	S.X.	H.G.	Please selecteFP Browser (expression)
0.08	12.9	Ptp.3664.1.S1_at	BU836355	hypothetical protein	-	2e-37	At2g17530	protein kinase family protein	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
30.6	99.9	GSM328281	Populus x canescens root control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
15.7	99.6	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
6.2	97.6	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
4.9	96.5	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.8	94.9	GSM328483	Populus x canescens root control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.3	93.7	GSM328566	Populus x canescens root hypoxia_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.2	93.5	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.1	93.2	GSM328561	Populus x canescens root control_rep_12	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.5	90.9	GSM328285	Populus x canescens root control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.89	0	1106	PtpAffx.225092.1.S1_at	pmrna44190	hypothetical protein	-	8e-9	At2g41480	electron carrier/ heme binding / peroxidase	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	1e-5	52	PtpAffx.249.187.S1_at	BP933230	-	-	5e-5	At1g71695	peroxidase 12 (PER12) (P12) (PRXR6)	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	1e-5	52	PtpAffx.201637.1.S1_at	pmrna3241	hypothetical protein	-	2e-15	At1g44970	peroxidase, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	4e-5	50	PtpAffx.18226.1.A1_a_at	CV263828	hypothetical protein	-	5e-17	At5g66390	peroxidase 72 (PER72) (P72) (PRXR8)	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	4e-5	50	Ptp.3694.1.S1_at	DN501465	hypothetical protein	-	6e-7	At1g68850	peroxidase, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	1e-2	42	PtpAffx.211367.1.S1_at	pmrna22281	hypothetical protein	-	3e-2	At2g24800	peroxidase, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	4e-2	40	PtpAffx.224349.1.S1_s_at	pmrna42815	hypothetical protein	-	5e-4	At3g01190	peroxidase 27 (PER27) (P27) (PRXR7)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	4e-2	40	PtpAffx.221972.1.S1_at	pmrna39118	hypothetical protein	-	2e-10	At1g19940	AtGH9B5 (Arabidopsis thaliana Glycosyl Hydrolase 9B5)	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	4e-2	40	PtpAffx.220034.1.S1_at	pmrna36291	hypothetical protein	-	1e-1	At5g39580	peroxidase, putative	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.26	5e-13	75	Arabidopsis thaliana	At2g41480	818746	electron carrier/ heme binding / peroxidase	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:unknown;POFBM	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.07	2e-4	48	Glycine max	Gma.5524.1.S1_at	BI967892	-	-	4e-2	At2g38390	peroxidase, putative	C.G.	S.X.	Please select
0.04	1e-6	54	Hordeum vulgare	Contig18641_at	Contig18641	-	-	5e-4	At1g68850	peroxidase, putative	C.G.	S.X.	Please select
0.15	1e-2	42	Oryza sativa	Os01g0172600	AK058554.1	-	Peroxidase 25 precursor (EC 1.11.1.7) (AtperoxP25)	2e-10	At2g41480	electron carrier/ heme binding / peroxidase	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	3e-5	50	Triticum aestivum	TaAffx.116491.1.S1_at	CA605687	-	-	3e-2	At1g44970	peroxidase, putative	C.G.	S.X.	Please select
0.02	2e+0	32	Vitis vinifera	1621609_at	AY348574.1	class III peroxidase GvPx2b	-	5e-7	At5g64120	peroxidase, putative	C.G.	S.X.	Please select
0.04	2e-7	56	Zea mays	Zm.2707.1.S1_at	BG842199	-	-	2e-1	At5g05340	peroxidase, putative	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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