Gene omics information

Query gene ID	PtpAffx.206110.1.S1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.97	99.9	PtpAffx.206110.1.S1_at	pmrna12113	hypothetical protein	-	8e-34	At2g41670	GTP-binding family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.39	64.6	Ptp.6905.1.A1_s_at	CV233868	hypothetical protein	-	1e-7	At5g54580	RNA recognition motif (RRM)-containing protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.36	61.6	PtpAffx.43563.1.A1_s_at	CV266754	hypothetical protein	-	1e-12	At1g59990	DEAD/DEAH box helicase, putative (RH22)	S.X.	H.G.	Please selecteFP Browser (expression)
0.27	47.1	PtpAffx.1025.1.A1_x_at	CV251532	hypothetical protein	-	2e-21	At1g17880	nascent polypeptide-associated complex (NAC) domain-containing protein / BTF3b-like transcription factor, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.24	41.8	PtpAffx.18541.1.A1_at	CV243196	hypothetical protein	-	7e-5	At5g52820	WD-40 repeat family protein / notchless protein, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.24	41.8	PtpAffx.17919.1.S1_at	CV273749	-	-	5e-79	At3g04770	RPSAb (40S ribosomal protein SA B)	S.X.	H.G.	Please selecteFP Browser (expression)
0.23	40.5	PtpAffx.119978.1.S1_s_at	CK109698	hypothetical protein	-	4e-1	At4g16830	nuclear RNA-binding protein (RGGA)	S.X.	H.G.	Please selecteFP Browser (expression)
0.23	40.5	PtpAffx.112471.1.S1_at	DN496621	hypothetical protein	-	2e+0	At2g32720	CB5-B (CYTOCHROME B5 ISOFORM B)	S.X.	H.G.	Please selecteFP Browser (expression)
0.23	40.5	Ptp.4492.2.S1_s_at	CF936740	hypothetical protein	-	1e+0	At1g47260	GAMMA CA2 (GAMMA CARBONIC ANHYDRASE 2)	S.X.	H.G.	Please selecteFP Browser (expression)
0.22	38.3	PtpAffx.43463.1.A1_at	CV270605	hypothetical protein	-	1e-6	At1g57540	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
11.0	99.1	GSM362884	Clone1979_LPI2_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.6	96.2	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.4	95.9	GSM244441	Mixed infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.9	95.1	GSM244438	Mmd infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.9	92.5	GSM362883	Clone1979_LPI2_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.8	92.1	GSM372100	Clone3200_LPI5_N+_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.6	91.3	GSM244433	Mlp infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.5	90.9	GSM327406	Populus balsamifera_1006_young_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM328566	Populus x canescens root hypoxia_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM327359	Populus balsamifera_20071015_Seedling_continuous_light_6d_3	GSE13990	Populus balsamifera developmental tissue series

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e-1	38	PtpAffx.206433.1.S1_at	pmrna12773	-	-	4e-37	Atcg01000	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e-1	38	PtpAffx.205030.1.S1_at	pmrna9958	hypothetical protein	-	5e-1	At2g37610	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e-1	38	PtpAffx.201387.1.S1_at	pmrna2737	hypothetical protein	-	7e-9	At5g11720	alpha-glucosidase 1 (AGLU1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	8e-1	36	PtpAffx.211625.1.S1_at	pmrna22784	hypothetical protein	-	6e-37	At1g01220	GHMP kinase-related	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	8e-1	36	Ptp.6265.1.S1_at	BU898230	hypothetical protein	-	6e-4	At5g66400	RAB18 (RESPONSIVE TO ABA 18)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	3e+0	34	PtpAffx.35031.1.S1_at	BU810466	hypothetical protein	-	9e-19	At1g55480	binding / protein binding	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	3e+0	34	PtpAffx.224760.1.S1_at	pmrna43594	BED finger-nbs resistance protein	-	4e+0	At3g14870	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	3e+0	34	PtpAffx.224088.1.S1_s_at	pmrna42325	hypothetical protein	-	3e-1	At1g10747	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	3e+0	34	PtpAffx.218966.1.S1_at	pmrna34737	GRAS domain protein	-	4e+0	At5g58640	selenoprotein-related	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.49	8e-34	145	Arabidopsis thaliana	At2g41670	818765	GTP-binding family protein	F:GTP binding;P:biological_process unknown;C:chloroplast;BOMFPA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.25	6e-20	99	Glycine max	GmaAffx.66865.1.S1_at	BU926377	-	-	1e+0	At5g61660	glycine-rich protein	C.G.	S.X.	Please select
0.15	2e-17	89	Hordeum vulgare	Contig13019_at	Contig13019	-	-	2e-10	At2g41670	GTP-binding family protein	C.G.	S.X.	Please select
0.27	9e-20	99	Oryza sativa	Os11g0447300	AK108044.1	-	GTP-binding protein, HSR1-related domaincontaining protein	8e-4	At2g41670	GTP-binding family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	2e+0	34	Triticum aestivum	Ta.30871.1.S1_at	BM134972	-	-	1e+0	At4g30670	unknown protein	C.G.	S.X.	Please select
0.02	7e-1	34	Vitis vinifera	1620925_at	CF209359	hypothetical protein LOC100264419	-	2e-1	Atmg01020	-	C.G.	S.X.	Please select
0.03	1e+0	34	Zea mays	Zm.1870.1.A1_at	AW498006	-	-	1e-3	At1g07180	NDA1 (ALTERNATIVE NAD(P)H DEHYDROGENASE 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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