Gene omics information

Query gene ID	PtpAffx.205944.1.S1_s_at
Gene name	ZIP transporter /// ZIP transporter /// ZIP transporter
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.68	91.3	PtpAffx.205944.1.S1_s_at	pmrna11796	ZIP transporter /// ZIP transporter /// ZIP transporter	-	5e-10	At3g12750	ZIP1 (ZINC TRANSPORTER 1 PRECURSOR)	S.X.	H.G.	Please selecteFP Browser (expression)
0.35	59.7	PtpAffx.201191.1.S1_a_at	pmrna2355	porin/voltage-dependent anion-selective channel protein	-	2e+0	At1g23110	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.34	58.3	PtpAffx.215345.1.S1_at	pmrna29476	hypothetical protein	-	6e-92	At5g52882	ATP binding / nucleoside-triphosphatase/ nucleotide binding	S.X.	H.G.	Please selecteFP Browser (expression)
0.32	55.2	PtpAffx.39413.1.S1_at	BI123070	-	-	1e+0	At5g40690	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.31	53.7	PtpAffx.222633.1.S1_at	pmrna40178	hypothetical protein	-	1e-2	At1g20560	AAE1 (ACYL ACTIVATING ENZYME 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.31	53.7	Ptp.4675.1.S1_s_at	CF233061	cytochrome P450	-	2e-5	At2g40890	CYP98A3 (cytochrome P450, family 98, subfamily A, polypeptide 3)	S.X.	H.G.	Please selecteFP Browser (expression)
0.26	45.2	PtpAffx.136820.1.S1_at	CV275296	hypothetical protein	-	6e-24	At1g71010	phosphatidylinositol-4-phosphate 5-kinase family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.26	45.2	PtpAffx.10695.1.A1_at	CV255466	hypothetical protein	-	3e-8	At5g61820	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.25	43.6	Ptp.5026.1.S1_s_at	CV237468	hypothetical protein	-	6e-7	At3g51370	protein phosphatase 2C, putative / PP2C, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.24	41.8	PtpAffx.210274.1.S1_at	pmrna20208	hypothetical protein	-	3e-12	At3g49200	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
11.7	99.2	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
11.3	99.2	GSM328483	Populus x canescens root control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
6.4	97.7	GSM328281	Populus x canescens root control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
5.7	97.3	GSM328284	Populus x canescens root control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
5.0	96.6	GSM328534	Populus x canescens root control_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.9	96.5	GSM328560	Populus x canescens root control_rep_11	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.4	95.9	GSM328285	Populus x canescens root control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.5	94.3	GSM328532	Populus x canescens root hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.5	94.3	GSM328559	Populus x canescens root control_rep_10	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.4	94.0	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.98	0	1806	PtpAffx.205944.1.S1_at	pmrna11796	ZIP transporter	-	5e-10	At3g12750	ZIP1 (ZINC TRANSPORTER 1 PRECURSOR)	C.G.	S.X.	Please selecteFP Browser (expression)
0.75	0	694	PtpAffx.205946.1.S1_at	pmrna11799	ZIP transporter	-	4e-10	At3g12750	ZIP1 (ZINC TRANSPORTER 1 PRECURSOR)	C.G.	S.X.	Please selecteFP Browser (expression)
0.20	1e-14	81	PtpAffx.24009.1.A1_at	CV279164	-	-	3e-2	At3g12750	ZIP1 (ZINC TRANSPORTER 1 PRECURSOR)	C.G.	S.X.	Please selecteFP Browser (expression)
0.12	4e-8	59	PtpAffx.209197.1.S1_at	pmrna18189	ZIP transporter	-	5e-1	At5g62160	AtZIP12 (ZINC TRANSPORTER 12 PRECURSOR)	C.G.	S.X.	Please selecteFP Browser (expression)
0.16	1e-2	42	PtpAffx.207835.1.S1_at	pmrna15562	ZIP transporter	-	2e-6	At5g62160	AtZIP12 (ZINC TRANSPORTER 12 PRECURSOR)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	4e-2	40	PtpAffx.4464.1.S1_a_at	CV240296	-	-	2e-7	At4g17720	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	4e-2	40	PtpAffx.13774.1.S1_at	CK091759	ZIP transporter	-	9e-1	At3g25550	F-box family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	7e-1	36	PtpAffx.38074.1.S1_at	CV227448	hypothetical protein	-	8e-9	At3g03880	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	7e-1	36	PtpAffx.213299.1.S1_at	pmrna26011	hypothetical protein	-	2e+0	At4g33550	lipid binding	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.07	5e-10	65	Arabidopsis thaliana	At3g12750	820457	ZIP1 (ZINC TRANSPORTER 1 PRECURSOR)	A member of Zrt- and Irt-related protein (ZIP) family. transcript is induced in response to zinc deficiency in the root.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.21	2e-16	87	Glycine max	Gma.8453.1.S1_at	AY029321.1	zinc transporter protein ZIP1	-	7e-19	At3g12750	ZIP1 (ZINC TRANSPORTER 1 PRECURSOR)	C.G.	S.X.	Please select
0.04	9e-1	34	Hordeum vulgare	HVSMEi0016B10r2_at	HVSMEi0016B10r2	-	-	1e-1	At2g25500	-	C.G.	S.X.	Please select
0.04	6e-2	40	Oryza sativa	OsAffx.15001.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	5e-1	36	Triticum aestivum	TaAffx.32350.1.S1_at	CA596598	-	-	4e+0	At3g32160	unknown protein	C.G.	S.X.	Please select
0.35	3e-21	101	Vitis vinifera	1618682_at	CA814693	hypothetical protein LOC100255284	-	5e-5	At5g62160	AtZIP12 (ZINC TRANSPORTER 12 PRECURSOR)	C.G.	S.X.	Please select
0.03	1e+1	30	Zea mays	ZmAffx.500.1.A1_at	AI691742	-	-	1e+1	At5g05670	signal recognition particle binding	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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