CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.205797.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.83 97.0 PtpAffx.205797.1.S1_at pmrna11460 hypothetical protein - 3e+0 At5g46730 glycine-rich protein S.X. H.G.
0.39 64.6 PtpAffx.204997.1.S1_at pmrna9891 - - 9e-7 At3g01870 unknown protein S.X. H.G.
0.31 53.7 PtpAffx.33700.1.S1_at CK096854 hypothetical protein - 1e-21 At4g34840 ATMTN2 S.X. H.G.
0.30 52.0 PtpAffx.213871.1.S1_at pmrna27055 hypothetical protein - 1e-5 At5g40400 - S.X. H.G.
0.28 50.5 PtpAffx.69736.1.A1_at CV245710 hypothetical protein - 1e-42 At3g50340 unknown protein S.X. H.G.
0.28 50.5 PtpAffx.37744.1.A1_s_at CV240812 hypothetical protein - 2e+0 At4g04200 peptidase S.X. H.G.
0.26 45.2 PtpAffx.17644.1.A1_at CV278694 - - 2e+0 At5g61605 unknown protein S.X. H.G.
0.25 43.6 PtpAffx.93186.1.S1_at BU814311 bromodomain protein - 1e+0 At3g15110 unknown protein S.X. H.G.
0.23 40.5 PtpAffx.64784.1.S1_at CV242340 hypothetical protein - 2e-6 At2g31260 APG9 (autophagy 9) S.X. H.G.
0.22 38.3 PtpAffx.49484.1.A1_s_at CV231831 hypothetical protein - 3e-5 At3g51770 ETO1 (ETHYLENE OVERPRODUCER 1) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
23.5 99.8 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
15.1 99.5 GSM327658 Populus balsamifera_Female_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
10.3 99.0 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
7.8 98.4 GSM327409 Populus balsamifera_1006_root_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.8 92.1 GSM327659 Populus balsamifera_Male_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.7 91.8 GSM328285 Populus x canescens root control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.2 89.3 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
1.8 86.4 GSM327408 Populus balsamifera_1006_root_midday_2 GSE13990 Populus balsamifera developmental tissue series
1.6 84.5 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
1.3 81.0 GSM244440 Mixed infected tissue, biological rep2 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.34 1e-83 309 PtpAffx.201631.1.S1_at pmrna3231 hypothetical protein - 2e+0 At5g46730 glycine-rich protein C.G. S.X.
0.07 8e-5 48 PtpAffx.205796.1.S1_at pmrna11458 hypothetical protein - 5e-2 At1g19715 jacalin lectin family protein C.G. S.X.
0.09 7e-2 38 PtpAffx.201633.1.S1_s_at pmrna3233 hypothetical protein - 2e-11 At1g19715 jacalin lectin family protein C.G. S.X.
0.01 3e-1 36 PtpAffx.214397.1.S1_x_at pmrna28011 hypothetical protein - 2e-51 At5g57580 calmodulin-binding protein C.G. S.X.
0.01 3e-1 36 PtpAffx.214397.1.S1_at pmrna28011 hypothetical protein - 2e-51 At5g57580 calmodulin-binding protein C.G. S.X.
0.05 3e-1 36 PtpAffx.132968.1.S1_at CF936730 - - 2e+0 At1g19715 jacalin lectin family protein C.G. S.X.
0.05 3e-1 36 PtpAffx.132968.1.S1_s_at CF936730 hypothetical protein - 2e+0 At1g19715 jacalin lectin family protein C.G. S.X.
0.03 1e+0 34 PtpAffx.45980.1.A1_at CV260873 - - 2e+0 At4g31420 zinc finger (C2H2 type) family protein C.G. S.X.
0.03 1e+0 34 PtpAffx.24406.2.A1_at CV247453 - - 6e-6 At4g31300 PBA1 C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 3e+0 32 Arabidopsis thaliana At5g46730 834716 glycine-rich protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MBOPFVA - - - C.G. S.X.
0.03 1e+0 34 Glycine max GmaAffx.6182.1.A1_at BI787004 - - 6e+0 At5g12060 self-incompatibility protein-related C.G. S.X.
0.04 2e+0 32 Hordeum vulgare Contig20866_at Contig20866 - - 8e-1 At4g23780 unknown protein C.G. S.X.
0.05 6e+0 32 Oryza sativa OsAffx.8602.1.S1_x_at - - - 0 C.G. S.X.
0.04 2e-1 36 Triticum aestivum Ta.12114.2.A1_at BG906052 - - 3e+0 At2g40670 ARR16 (ARABIDOPSIS RESPONSE REGULATOR 16) C.G. S.X.
0.04 4e+0 30 Vitis vinifera 1619746_at BQ792408 - - 3e+0 At2g03110 RNA binding / nucleic acid binding C.G. S.X.
0.04 6e+0 30 Zea mays Zm.4510.3.S1_at AI734509 hypothetical protein LOC100193304 - 2e-1 At5g24879 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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