Gene omics information

Query gene ID	PtpAffx.205785.1.S1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.61	87.0	PtpAffx.205785.1.S1_at	pmrna11442	hypothetical protein	-	4e-33	At1g27620	transferase family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.43	69.7	Ptp.8039.1.S1_at	AJ770090	hypothetical protein	-	4e-1	At2g01610	invertase/pectin methylesterase inhibitor family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.41	67.7	PtpAffx.102128.1.A1_at	CV236844	hypothetical protein	-	1e-7	At5g03700	PAN domain-containing protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.36	61.6	Ptp.4034.2.S1_s_at	CV243854	hypothetical protein	-	9e-15	At2g28790	osmotin-like protein, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.28	50.5	PtpAffx.28677.1.S1_at	AI166422	hypothetical protein	-	8e-14	At1g27620	transferase family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.25	43.6	PtpAffx.214395.1.S1_at	pmrna28007	hypothetical protein	-	2e-24	At4g30270	MERI5B (meristem-5)	S.X.	H.G.	Please selecteFP Browser (expression)
0.24	41.8	PtpAffx.215737.1.S1_at	pmrna30101	ABC transporter family, retinal flippase subfamily	-	2e-18	At5g61730	ATATH11	S.X.	H.G.	Please selecteFP Browser (expression)
0.21	36.5	PtpAffx.112384.1.S1_s_at	DN500495	hypothetical protein	-	3e-7	At3g23730	xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.18	30.8	PtpAffx.220022.1.S1_s_at	pmrna36269	hypothetical protein	-	2e+0	At1g53610	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.17	29.1	PtpAffx.43846.1.A1_at	CV256274	hypothetical protein	-	2e+0	At3g06000	leucine-rich repeat family protein	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
17.5	99.6	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
16.0	99.6	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
10.9	99.1	GSM328565	Populus x canescens root hypoxia_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.6	96.2	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
4.0	95.3	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.9	95.1	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.7	94.7	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.4	94.0	GSM328281	Populus x canescens root control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.3	93.7	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.1	93.2	GSM328562	Populus x canescens root hypoxia_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.87	0	1536	PtpAffx.201638.1.S1_at	pmrna3250	hypothetical protein	-	1e-23	At1g27620	transferase family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.50	0	854	PtpAffx.28677.1.S1_at	AI166422	hypothetical protein	-	8e-14	At1g27620	transferase family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	9e-1	36	PtpAffx.220918.1.S1_at	pmrna37403	hypothetical protein	-	7e-20	At2g35130	pentatricopeptide (PPR) repeat-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	9e-1	36	PtpAffx.211652.1.S1_at	pmrna22829	hypothetical protein	-	8e-10	At4g01400	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	9e-1	36	PtpAffx.210439.1.S1_at	pmrna20500	aminophospholipid ATPase	-	6e-65	At1g68710	haloacid dehalogenase-like hydrolase family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	9e-1	36	PtpAffx.210439.1.S1_s_at	pmrna20500	aminophospholipid ATPase	-	6e-65	At1g68710	haloacid dehalogenase-like hydrolase family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	9e-1	36	PtpAffx.209839.1.S1_s_at	pmrna19399	hypothetical protein	-	7e-1	At3g08010	ATAB2	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	9e-1	36	PtpAffx.209839.1.S1_at	pmrna19399	hypothetical protein	-	7e-1	At3g08010	ATAB2	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	9e-1	36	Ptp.2511.1.S1_at	CK093731	hypothetical protein	-	1e+0	At5g10330	HPA1 (HISTIDINOL PHOSPHATE AMINOTRANSFERASE 1)	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.22	4e-33	143	Arabidopsis thaliana	At1g27620	839654	transferase family protein	F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.16	5e-24	113	Glycine max	GmaAffx.51045.1.S1_at	BM522713	-	-	2e-7	At1g27620	transferase family protein	C.G.	S.X.	Please select
0.02	1e+0	34	Hordeum vulgare	Contig23208_at	Contig23208	-	-	3e-1	At4g30460	glycine-rich protein	C.G.	S.X.	Please select
0.02	5e+0	34	Oryza sativa	OsAffx.12583.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	3e+0	34	Triticum aestivum	TaAffx.23904.1.S1_at	CA728610	-	-	2e-2	At4g31290	ChaC-like family protein	C.G.	S.X.	Please select
0.02	7e-1	34	Vitis vinifera	1607826_at	CF210018	-	-	1e+0	At5g07571	-	C.G.	S.X.	Please select
0.02	1e+0	34	Zea mays	Zm.2331.1.S1_x_at	AY106132.1	protein induced upon tuberization	-	2e+0	At3g44718	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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