Gene omics information

Query gene ID	PtpAffx.205723.1.S1_x_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.83	97.0	PtpAffx.205723.1.S1_x_at	pmrna11295	hypothetical protein	-	2e-5	At3g22930	calmodulin, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.224796.1.S1_s_at	pmrna43650	hypothetical protein	-	5e-5	At2g34790	MEE23 (MATERNAL EFFECT EMBRYO ARREST 23)	S.X.	H.G.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.202093.1.S1_s_at	pmrna4169	hypothetical protein	-	6e-2	At1g10370	ERD9 (EARLY-RESPONSIVE TO DEHYDRATION 9)	S.X.	H.G.	Please selecteFP Browser (expression)
0.40	67.0	PtpAffx.204743.1.S1_at	pmrna9337	hypothetical protein	-	3e-1	At5g46030	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.33	57.5	PtpAffx.5989.2.S1_s_at	CV259773	hypothetical protein	-	6e-8	At5g25880	ATNADP-ME3 (NADP-malic enzyme 3)	S.X.	H.G.	Please selecteFP Browser (expression)
0.30	52.0	PtpAffx.207438.1.S1_at	pmrna14771	hypothetical protein	-	3e-1	At5g42146	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
33.0	99.9	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
15.6	99.5	GSM328483	Populus x canescens root control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
5.1	96.8	GSM328281	Populus x canescens root control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.9	96.5	GSM328566	Populus x canescens root hypoxia_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.2	95.6	GSM328561	Populus x canescens root control_rep_12	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.6	94.5	GSM328284	Populus x canescens root control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.5	94.3	GSM328563	Populus x canescens root hypoxia_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM328557	Populus x canescens root control_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM328533	Populus x canescens root hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.53	7e-68	256	PtpAffx.201697.1.S1_at	pmrna3386	hypothetical protein	-	4e-3	At4g14640	CAM8 (CALMODULIN 8)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	1e-1	36	PtpAffx.218965.1.S1_s_at	pmrna34736	hypothetical protein	-	8e-1	At5g66658	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	1e-1	36	PtpAffx.213249.1.S1_at	pmrna25911	hypothetical protein	-	4e-2	At3g56720	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	1e-1	36	PtpAffx.200160.1.S1_x_at	pmrna300	hypothetical protein	-	2e+0	At5g66658	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.05	1e-1	36	Ptp.5885.1.S1_s_at	CF231968	hypothetical protein	-	9e-88	At5g21274	CAM6 (CALMODULIN 6)	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	1e-1	36	Ptp.1551.1.S1_at	CV260940	hypothetical protein	-	3e-98	At3g43810	CAM7 (CALMODULIN 7)	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	1e-1	36	Ptp.1551.1.S1_x_at	CV260940	hypothetical protein	-	3e-98	At3g43810	CAM7 (CALMODULIN 7)	C.G.	S.X.	Please selecteFP Browser (expression)
0.05	1e-1	36	Ptp.1551.2.S1_at	BU882242	hypothetical protein	-	6e-98	At5g21274	CAM6 (CALMODULIN 6)	C.G.	S.X.	Please selecteFP Browser (expression)
0.09	5e-1	34	PtpAffx.93389.1.S1_at	DN496384	calcium dependent protein kinase 27	-	4e-8	At1g76040	CPK29	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.19	2e-5	48	Arabidopsis thaliana	At3g22930	821865	calmodulin, putative	F:calcium ion binding;P:biological_process unknown;C:unknown;MOFPBV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.06	3e-2	38	Glycine max	Gma.3223.1.S1_at	L01433.1	calmodulin	-	7e-41	At3g22930	calmodulin, putative	C.G.	S.X.	Please select
0.08	3e+0	30	Hordeum vulgare	HV05C17u_at	HV05C17u	-	-	3e-1	At1g65820	microsomal glutathione s-transferase, putative	C.G.	S.X.	Please select
0.04	3e+0	32	Oryza sativa	OsAffx.24715.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.06	1e+0	32	Triticum aestivum	TaAffx.79113.1.S1_at	CA721166	-	-	7e-1	At2g30270	unknown protein	C.G.	S.X.	Please select
0.12	2e-3	40	Vitis vinifera	1620074_at	CD713563	hypothetical protein LOC100244152	-	2e-39	At3g22930	calmodulin, putative	C.G.	S.X.	Please select
0.04	2e+0	30	Zea mays	Zm.9933.1.A1_at	BM349388	-	-	2e-5	At2g19160	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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